BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0507300 Os01g0507300|AK099867
         (291 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19930.1  | chr5:6737872-6739283 REVERSE LENGTH=289            310   4e-85

>AT5G19930.1 | chr5:6737872-6739283 REVERSE LENGTH=289
          Length = 288

 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 153/261 (58%), Positives = 184/261 (70%)

Query: 31  SLDGSGGAAGFVVMAIHLACGYRYGALVLAFFFTSSKATKIGADRKRRIEDDFKEGGQRN 90
           SLD SGG AGF+VM IH   G+RYGAL+L FF TSSK TK+G D+KRR++ +FKEGGQRN
Sbjct: 28  SLDLSGGIAGFLVMTIHFTAGFRYGALLLVFFLTSSKLTKVGEDKKRRVDVEFKEGGQRN 87

Query: 91  WIQVLANSXXXXXXXXXXXXMTGGQDQCLDSHESKVITXXXXXXXXHYCCCNGDTWSSEL 150
           W+QVL NS            +TG +D+CLDS +S+++T        HY CCNGDTWSSEL
Sbjct: 88  WVQVLCNSGIASVLVVIACTLTGWKDKCLDSKQSEIVTALIGGIIGHYACCNGDTWSSEL 147

Query: 151 GVLSDEQPRLITTLKPVRKGTNXXXXXXXXXXXXXXXXXXXXXFVFVGLLTVECSFDVAL 210
           GVLSD QPRLITT KPV+KGTN                     F+  GL T  C+ DVAL
Sbjct: 148 GVLSDAQPRLITTFKPVKKGTNGGVTKAGLLAALAAGTTVGLTFLIFGLFTASCASDVAL 207

Query: 211 RQLLVIPISATAGLLGSLIDSVLGATLQFSGYCSVRKKVVSKRGPTVTKISGMTILDNDA 270
           +QLLVIP+SA AGL GSLIDS+LGAT+QFSG+CSVR KVV K GPTV KISG+ ILDN+ 
Sbjct: 208 KQLLVIPLSALAGLCGSLIDSILGATIQFSGFCSVRNKVVGKPGPTVKKISGVDILDNNG 267

Query: 271 VNAVSVLLTTAVTAYACIRIF 291
           VN VS+LLT+ +T+ A + IF
Sbjct: 268 VNFVSILLTSFLTSIASVYIF 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,489,430
Number of extensions: 139342
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)