BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0502400 Os01g0502400|AK065149
         (392 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0502400  Prolyl 4-hydroxylase, alpha subunit domain con...   822   0.0  
Os01g0180900  Prolyl 4-hydroxylase, alpha subunit domain con...   395   e-110

>Os01g0502400 Prolyl 4-hydroxylase, alpha subunit domain containing protein
          Length = 392

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/392 (100%), Positives = 392/392 (100%)

Query: 1   MALDGPAERRDEAQAAMGNGNGVAPPPLRPAGRPSGAPACADRRLRLNPNMEHKPQDYSD 60
           MALDGPAERRDEAQAAMGNGNGVAPPPLRPAGRPSGAPACADRRLRLNPNMEHKPQDYSD
Sbjct: 1   MALDGPAERRDEAQAAMGNGNGVAPPPLRPAGRPSGAPACADRRLRLNPNMEHKPQDYSD 60

Query: 61  VRGEYAPAVYSALERHLPPSVLDANREIKLQLMREVLGHYWPHGERNKVQRHREYRQRIL 120
           VRGEYAPAVYSALERHLPPSVLDANREIKLQLMREVLGHYWPHGERNKVQRHREYRQRIL
Sbjct: 61  VRGEYAPAVYSALERHLPPSVLDANREIKLQLMREVLGHYWPHGERNKVQRHREYRQRIL 120

Query: 121 NHYKPLHKELYKMRPSSFFLPTFLEAIRTNTEESFRSIMTEPVPGVYSFAMLQPNFCEML 180
           NHYKPLHKELYKMRPSSFFLPTFLEAIRTNTEESFRSIMTEPVPGVYSFAMLQPNFCEML
Sbjct: 121 NHYKPLHKELYKMRPSSFFLPTFLEAIRTNTEESFRSIMTEPVPGVYSFAMLQPNFCEML 180

Query: 181 LQEVENFEKWVHTMKFKIMRPNTMNKYGAVLDDFGLEVMLNQFMEQFIAPMSTVLYPEVG 240
           LQEVENFEKWVHTMKFKIMRPNTMNKYGAVLDDFGLEVMLNQFMEQFIAPMSTVLYPEVG
Sbjct: 181 LQEVENFEKWVHTMKFKIMRPNTMNKYGAVLDDFGLEVMLNQFMEQFIAPMSTVLYPEVG 240

Query: 241 GGTLDTHHAFVVEYGKDRDVELGFHVDDSEVTLNVCLGKQFSGGELYFRGIRCENHVNSE 300
           GGTLDTHHAFVVEYGKDRDVELGFHVDDSEVTLNVCLGKQFSGGELYFRGIRCENHVNSE
Sbjct: 241 GGTLDTHHAFVVEYGKDRDVELGFHVDDSEVTLNVCLGKQFSGGELYFRGIRCENHVNSE 300

Query: 301 TQHEEMFDYSHVPGRAVLHRGRHRHGARPTSSGLRINLLLWCRSSVFREMKKYQKDFSGW 360
           TQHEEMFDYSHVPGRAVLHRGRHRHGARPTSSGLRINLLLWCRSSVFREMKKYQKDFSGW
Sbjct: 301 TQHEEMFDYSHVPGRAVLHRGRHRHGARPTSSGLRINLLLWCRSSVFREMKKYQKDFSGW 360

Query: 361 CGECKREKKERQIHAVKATKLAFLRGAGGATI 392
           CGECKREKKERQIHAVKATKLAFLRGAGGATI
Sbjct: 361 CGECKREKKERQIHAVKATKLAFLRGAGGATI 392



>Os01g0180900 Prolyl 4-hydroxylase, alpha subunit domain containing protein
          Length = 433

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/339 (55%), Positives = 244/339 (71%), Gaps = 6/339 (1%)

Query: 44  RLRLNPNMEHKPQDYSDVRGE--YAPAVYSALERHLPPSVLDANREIKLQLMREVLGHYW 101
           RL+  PN +H P +Y D   E    PAVY ALERHLPP +  A  E+K   MR VL +Y 
Sbjct: 78  RLQAVPNEDHVPDNYGDGPDELGITPAVYQALERHLPPDLAGAPAEVKRYFMRSVLRNYV 137

Query: 102 PH-GERNKVQRHREYRQRILNHYKPLHKELYKMRPSSFFLPTFLEAIRTNTEESFRSIMT 160
           P   +R + Q  REYR+RIL+ Y+PLH ELY   PS+F LP FL+AI  NTEES  SIM 
Sbjct: 138 PSPSQRIRTQNQREYRERILSAYQPLHPELYTNDPSTFILPAFLQAINGNTEESITSIMM 197

Query: 161 EPVPGVYSFAMLQPNFCEMLLQEVENFEKWVHTMKFKIMRPNTMNKYG--AVLDDFGLEV 218
           EP PGV++F ML+P+FC+ML+ EV NF +W  +   +IMRP +++++G  A L DFGL+ 
Sbjct: 198 EPAPGVFAFPMLKPSFCQMLMSEVNNFLRWAQSANQRIMRPTSLDRHGRGAALSDFGLQE 257

Query: 219 MLNQFMEQFIAPMSTVLYPEVGGGTLDTHHAFVVEYGKDRDVELGFHVDDSEVTLNVCLG 278
           ML+  M+ FI+PMSTVL+PEVGG TLD+HH FV+EYG + D   GFHVDDSEVTLN+CLG
Sbjct: 258 MLDNLMKDFISPMSTVLFPEVGGNTLDSHHTFVLEYG-EADGARGFHVDDSEVTLNICLG 316

Query: 279 KQFSGGELYFRGIRCENHVNSETQHEEMFDYSHVPGRAVLHRGRHRHGARPTSSGLRINL 338
           K F+G ++YFRGIRC NHVNS T  EE F + +VPG+ +LH G HRHG    +SG R+N+
Sbjct: 317 KHFTGADMYFRGIRCGNHVNSGTHDEEYFVHPNVPGQVLLHHGSHRHGVFSVTSGRRVNM 376

Query: 339 LLWCRSSVFREMKKYQKDFSGWCGECKREKKERQIHAVK 377
           ++WC+SSVFREMKK+  DFSG+C EC+ ++  RQ+  ++
Sbjct: 377 VMWCKSSVFREMKKFMTDFSGFCCECQFQRTARQVQHLQ 415



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,194,068
Number of extensions: 688486
Number of successful extensions: 2321
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2317
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)