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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0180900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0358) R2 : 0.141
β1 : -0.145 (0.135) R2dD : 0.00267 R2D : -0.00963
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.97 (0.303) R2dE : 0.118 R2E : -0.0426
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -18.5 (2.46) R2dD*E : 0.183 R2D*E : 0.0147
γ1 : -0.119 (0.0768) R2dN8 : 0.00367 R2N8 : 0.00738
σ : 0.67
deviance : 206.72
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.85
memory length : 9
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 0.933

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.99 0.674 2.92 -0.15 0.199 1.79 -0.207 -17.1 -0.104 1.36 1.851 10 17 0.977
232.67 0.71 2.92 0.0678 0.187 0.453 -0.205 -- -0.145 0.428 2.269 16 17 0.975
204.65 0.666 2.92 -0.145 0.188 1.8 -- -17.1 -0.108 0.942 1.851 9 17 0.949
232.58 0.71 2.92 0.0679 0.192 0.494 -- -- -0.146 23.8 2.25 16 17 0.983
206.72 0.67 2.91 -0.145 -- 1.97 -- -18.5 -0.119 -- 1.85 9 17 0.933
235.75 0.72 2.92 0.0881 0.203 -- -0.205 -- -0.145 22.8 -- -- -- --
235.92 0.719 2.92 0.0961 0.203 -- -- -- -0.144 23 -- -- -- --
228.42 0.704 2.92 0.0486 -- 0.399 -- -- -0.17 -- 2.148 694 17 1.07
232.71 0.71 2.92 -- 0.178 0.538 -- -- -0.145 0.104 2.27 16 17 0.967
238.5 0.722 2.91 0.101 -- -- -- -- -0.143 -- -- -- -- --
236.16 0.719 2.92 -- 0.204 -- -- -- -0.155 23 -- -- -- --
228.57 0.704 2.92 -- -- 0.407 -- -- -0.18 -- 2.149 692 17 1.1
238.77 0.721 2.91 -- -- -- -- -- -0.154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.18 radiation 1 10 > th dose independent rect. 17 1
2 213.82 radiation 1 270 < th dose independent rect. 14 1
3 213.82 radiation 1 270 < th dose dependent rect. 14 1
4 214.07 temperature 20 10 < th dose dependent rect. 12 7
19 214.48 temperature 20 270 < th dose dependent rect. 12 3
20 214.48 temperature 20 10 < th dose dependent rect. 10 9
25 215.13 temperature 20 90 < th dose independent rect. 12 6
27 215.29 temperature 20 270 < th dose independent rect. 12 4
28 215.34 temperature 20 90 < th dose independent rect. 14 5
29 215.64 temperature 25 270 < th dose dependent rect. 14 1
33 215.74 temperature 20 270 < th dose independent rect. 14 1
36 215.79 temperature 20 30 < th dose dependent rect. 14 5
123 218.89 wind 5 10 < th dose independent rect. 16 2
127 219.13 humidity 70 30 > th dose dependent rect. 15 3
148 220.40 wind 7 10 < th dose dependent rect. 16 2
151 220.45 humidity 70 270 > th dose independent rect. 15 1
152 220.45 humidity 70 90 > th dose independent rect. 14 4
153 220.46 radiation 30 270 < th dose independent rect. 13 15
154 220.51 humidity 50 90 > th dose independent rect. 1 17
185 221.53 temperature 20 10 < th dose independent rect. 12 7
190 221.76 humidity 50 90 < th dose dependent rect. 12 2
206 222.05 temperature 30 720 < th dose independent rect. 15 3
227 222.27 humidity 50 30 < th dose independent rect. 12 2
290 222.34 atmosphere 1000 10 < th dose independent rect. 21 1
297 222.34 atmosphere 1000 10 < th dose dependent rect. 21 1
454 222.62 radiation 30 270 < th dose independent rect. 14 1
455 222.63 temperature 25 270 < th dose independent rect. 18 5
504 222.88 humidity 60 270 > th dose independent rect. 23 19
533 223.00 wind 1 1440 < th dose independent rect. 2 4
537 223.04 temperature 10 270 > th dose dependent rect. 16 22
562 223.12 humidity 50 10 < th dose dependent sin 14 NA
567 223.15 humidity 90 90 > th dose independent rect. 16 2
575 223.20 humidity 70 90 > th dose independent rect. 14 14
579 223.22 humidity 50 10 < th dose independent sin 18 NA
582 223.26 radiation 1 90 > th dose dependent rect. 17 1
610 223.37 temperature 30 720 < th dose independent rect. 15 11
611 223.39 radiation 30 270 < th dose independent rect. 13 4
612 223.39 atmosphere 1000 270 > th dose independent rect. 15 23
628 223.53 wind 7 90 < th dose independent rect. 15 13
635 223.59 humidity 50 10 < th dose independent rect. 13 23
687 223.71 humidity 50 90 < th dose dependent sin 7 NA
697 223.76 wind 3 720 > th dose independent rect. 6 1
703 223.79 humidity 90 30 < th dose independent rect. 3 1
727 223.90 wind 1 1440 > th dose independent rect. 2 4
728 223.90 temperature 30 270 < th dose dependent rect. 12 21
748 223.94 wind 3 720 > th dose dependent rect. 6 1
755 223.97 atmosphere 995 1440 > th dose independent rect. 19 20
762 223.99 wind 7 10 < th dose independent rect. 15 14
774 224.00 temperature 10 720 > th dose dependent rect. 10 13
780 224.02 temperature 20 10 < th dose independent rect. 10 9
784 224.04 humidity 50 10 < th dose independent no NA NA
960 224.06 humidity 90 90 < th dose dependent rect. 2 3
967 224.10 humidity 50 10 > th dose independent rect. 6 13
979 224.15 temperature 25 720 > th dose independent rect. 10 15
980 224.16 humidity 50 90 > th dose independent rect. 7 12
989 224.20 atmosphere 995 1440 > th dose independent rect. 5 10
991 224.20 temperature 30 90 < th dose dependent rect. 18 7