Os01g0502400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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Os01g0502400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.87 | 0.162 | 11.5 | -0.242 | 0.0962 | 0.628 | 0.126 | -0.831 | -0.197 | 13.6 | 19.97 | 214 | -- | -- |
| 12.33 | 0.164 | 11.5 | -0.0951 | 0.114 | 0.606 | -0.0172 | -- | -0.156 | 13.2 | 18.43 | 249 | -- | -- |
| 11.92 | 0.161 | 11.5 | -0.22 | 0.0944 | 0.63 | -- | -0.73 | -0.192 | 13.2 | 20.13 | 214 | -- | -- |
| 12.33 | 0.164 | 11.5 | -0.0959 | 0.114 | 0.607 | -- | -- | -0.155 | 13.2 | 18.37 | 249 | -- | -- |
| 11.99 | 0.161 | 11.5 | -0.253 | -- | 0.729 | -- | -1.1 | -0.19 | -- | 23.34 | 129 | -- | -- |
| 17.85 | 0.198 | 11.4 | 0.0474 | 0.302 | -- | 0.0966 | -- | -0.0534 | 15.4 | -- | -- | -- | -- |
| 17.88 | 0.198 | 11.4 | 0.0492 | 0.303 | -- | -- | -- | -0.0529 | 15.4 | -- | -- | -- | -- |
| 12.55 | 0.165 | 11.5 | -0.0807 | -- | 0.641 | -- | -- | -0.154 | -- | 22.35 | 97 | -- | -- |
| 12.53 | 0.165 | 11.5 | -- | 0.125 | 0.547 | -- | -- | -0.141 | 13.4 | 19.2 | 246 | -- | -- |
| 23.02 | 0.224 | 11.4 | 0.0364 | -- | -- | -- | -- | -0.0609 | -- | -- | -- | -- | -- |
| 17.94 | 0.198 | 11.4 | -- | 0.302 | -- | -- | -- | -0.0584 | 15.4 | -- | -- | -- | -- |
| 12.71 | 0.166 | 11.5 | -- | -- | 0.616 | -- | -- | -0.133 | -- | 23.36 | 91 | -- | -- |
| 23.05 | 0.224 | 11.4 | -- | -- | -- | -- | -- | -0.0649 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 3 | 10.27 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 10 | 10.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 27 | 10.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 55 | 10.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 88 | 10.81 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 102 | 10.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 111 | 10.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 264 | 11.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 273 | 11.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 342 | 11.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 346 | 11.48 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 359 | 11.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 362 | 11.51 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 375 | 11.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 464 | 11.65 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 473 | 11.67 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 480 | 11.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 486 | 11.69 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 555 | 11.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 586 | 11.82 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 622 | 11.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 642 | 11.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 652 | 11.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 688 | 11.93 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 760 | 12.01 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 803 | 12.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 813 | 12.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 849 | 12.10 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 869 | 12.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 890 | 12.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 907 | 12.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |