BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0385900 Os01g0385900|Os01g0385900
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0385900 325 1e-89
Os01g0557850 197 2e-51
Os04g0122100 95 3e-20
Os08g0563000 90 8e-19
Os07g0233700 89 1e-18
Os08g0114900 89 2e-18
Os06g0119500 87 7e-18
Os05g0315600 86 9e-18
Os03g0236400 84 5e-17
Os04g0131100 83 1e-16
Os03g0556100 82 1e-16
Os03g0643433 Endonuclease/exonuclease/phosphatase domain co... 82 2e-16
Os08g0206200 82 2e-16
Os09g0284100 82 2e-16
Os05g0241800 76 9e-15
Os08g0378200 75 3e-14
Os05g0294900 74 5e-14
Os05g0303900 74 6e-14
Os11g0312100 67 6e-12
Os07g0235600 65 3e-11
>Os01g0385900
Length = 159
Score = 325 bits (832), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MKMRAKRAEKIKAGRNLEVQNVKDKVISSSFSKLGFIDANNDSNFVNAIKDIRTLEEARL 60
MKMRAKRAEKIKAGRNLEVQNVKDKVISSSFSKLGFIDANNDSNFVNAIKDIRTLEEARL
Sbjct: 1 MKMRAKRAEKIKAGRNLEVQNVKDKVISSSFSKLGFIDANNDSNFVNAIKDIRTLEEARL 60
Query: 61 SDCISLKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLRE 120
SDCISLKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLRE
Sbjct: 61 SDCISLKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLRE 120
Query: 121 EEIKWYQRAKTKDILEGDSNTKYFHLVANVQRGYEDSTI 159
EEIKWYQRAKTKDILEGDSNTKYFHLVANVQRGYEDSTI
Sbjct: 121 EEIKWYQRAKTKDILEGDSNTKYFHLVANVQRGYEDSTI 159
>Os01g0557850
Length = 402
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/123 (79%), Positives = 107/123 (86%)
Query: 2 KMRAKRAEKIKAGRNLEVQNVKDKVISSSFSKLGFIDANNDSNFVNAIKDIRTLEEARLS 61
++ +RAEKIKAGRNLEVQNVKDKVISSS SKLGFIDANNDSNFVNAIKDIR+LEEARLS
Sbjct: 251 QLTLQRAEKIKAGRNLEVQNVKDKVISSSLSKLGFIDANNDSNFVNAIKDIRSLEEARLS 310
Query: 62 DCISLKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLREE 121
DCISLKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEE A +++R +E
Sbjct: 311 DCISLKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEEVLFRATYWLRGWAQLQRHDE 370
Query: 122 EIK 124
+IK
Sbjct: 371 DIK 373
>Os04g0122100
Length = 297
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 15/159 (9%)
Query: 2 KMRAKRAEKIKAGRNLE-VQNVKDKVISSSFSKLGFIDANNDSNFVNAIKDIRTLEEARL 60
+M +RAEK+KA RNLE +Q+ ++V SS +D N S+ + IR RL
Sbjct: 130 QMVLERAEKLKAERNLENLQSKSNEVWSS-------VDEGN-SSMEHWHAKIR-----RL 176
Query: 61 SDCISLKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLRE 120
KH S ++ + E D + + + +K + ++ +EE+N + + RNRL+ LLRE
Sbjct: 177 RQHPRGWAKHTSGIY-KKEKKDLLDKLDFLDKKAETVLLTQEEINFRWFYRNRLSSLLRE 235
Query: 121 EEIKWYQRAKTKDILEGDSNTKYFHLVANVQRGYEDSTI 159
EEIKWYQR+KTKDILEGDSNTKYFHLVAN G D+++
Sbjct: 236 EEIKWYQRSKTKDILEGDSNTKYFHLVANGLFGPTDNSV 274
>Os08g0563000
Length = 1689
Score = 89.7 bits (221), Expect = 8e-19, Method: Composition-based stats.
Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 3/82 (3%)
Query: 69 KHNSTVFP-ENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLREEEIKWYQ 127
KH S ++ E + D+LE ++ +K + ++ +EE++ + + R+RL+ +LREEEIKWYQ
Sbjct: 1266 KHTSGLYKKEKKHILDKLE--ALDKKAETVLLSQEEVDIRWFFRSRLSVILREEEIKWYQ 1323
Query: 128 RAKTKDILEGDSNTKYFHLVAN 149
RAKTKDILEGDSNTKYFHLVAN
Sbjct: 1324 RAKTKDILEGDSNTKYFHLVAN 1345
>Os07g0233700
Length = 973
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 47/56 (83%)
Query: 101 EEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVANVQRGYED 156
+EE++ + Y RNRL+ LLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN G D
Sbjct: 719 QEEIDIRVYYRNRLSTLLREEEIKWYQRAKTKDILEGDSNTKYFHLVANGLFGPPD 774
>Os08g0114900
Length = 1091
Score = 88.6 bits (218), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 3/82 (3%)
Query: 69 KHNSTVFP-ENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLREEEIKWYQ 127
KH S ++ E + D+LE ++ +K + ++ +EE++ + + R+RL+ +LREEEIKWYQ
Sbjct: 764 KHTSGLYKKEKKHILDKLE--ALDKKAETVLLSQEEVDIRWFFRSRLSVILREEEIKWYQ 821
Query: 128 RAKTKDILEGDSNTKYFHLVAN 149
RAKTKDILEGDSNTKYFHLVAN
Sbjct: 822 RAKTKDILEGDSNTKYFHLVAN 843
>Os06g0119500
Length = 506
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 3/82 (3%)
Query: 69 KHNSTVFP-ENELTDDQLEDNSVLEKLCSEIMEEEELNAKHYMRNRLAFLLREEEIKWYQ 127
KH S ++ E + D+LE ++ +K + ++ +EE++ + + R+RL+ +LREEEIKWYQ
Sbjct: 296 KHTSGLYKKEKKQILDKLE--ALDKKAETVLLSQEEVDIRWFFRSRLSVILREEEIKWYQ 353
Query: 128 RAKTKDILEGDSNTKYFHLVAN 149
RAKTKDILEGDSNTKYFHLVAN
Sbjct: 354 RAKTKDILEGDSNTKYFHLVAN 375
>Os05g0315600
Length = 741
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 47/52 (90%)
Query: 98 IMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
++ +EEL+ + + RNRL+ +LREEE+KWYQRAK+KDILEGDSNTKYFHLVAN
Sbjct: 477 LLSQEELDFRWFCRNRLSTILREEEVKWYQRAKSKDILEGDSNTKYFHLVAN 528
>Os03g0236400
Length = 1618
Score = 84.0 bits (206), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 98 IMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
I+ E ELN KH + +RLA LLREEEIKWYQRAK K +LEGD+NTKY+HL+AN
Sbjct: 1162 ILNEFELNVKHVLNDRLAELLREEEIKWYQRAKVKHLLEGDANTKYYHLLAN 1213
>Os04g0131100
Length = 192
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 46/52 (88%)
Query: 98 IMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
++ +EEL+ + + RNRL+ ++REEEIKWY RAK+KDILEGDSNTKYFHLVAN
Sbjct: 71 LLSQEELDIRWFYRNRLSSIMREEEIKWYLRAKSKDILEGDSNTKYFHLVAN 122
>Os03g0556100
Length = 1259
Score = 82.4 bits (202), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 49/61 (80%)
Query: 89 SVLEKLCSEIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVA 148
++++K I+ E ELN KH + +RLA LLREEEIKWYQRAK K +LEGD+NTKY+HL+A
Sbjct: 786 TLVKKAEHTILNEFELNVKHVLNDRLAELLREEEIKWYQRAKVKHLLEGDANTKYYHLLA 845
Query: 149 N 149
N
Sbjct: 846 N 846
>Os03g0643433 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 721
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 96 SEIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
S+++ +EL+ K+Y++ RL+FLLREEEIKW QRAKTK ILEGD NTKY+HL+AN
Sbjct: 311 SQLLSRQELDLKNYVKQRLSFLLREEEIKWLQRAKTKRILEGDRNTKYYHLIAN 364
>Os08g0206200
Length = 658
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 47/53 (88%)
Query: 97 EIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
+++ +EL+ K+Y++NRLA LLREEEIKWYQRAKTK I+EGD NTKY+H++AN
Sbjct: 290 QVLSSQELDIKNYVKNRLATLLREEEIKWYQRAKTKRIVEGDRNTKYYHMIAN 342
>Os09g0284100
Length = 1585
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 48/53 (90%)
Query: 97 EIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
+I+ ++EL+ K++++NRLA LLR+EEIKWYQRAKT+ I+EGD NTKY+H++AN
Sbjct: 1311 QILTKQELDLKNFLKNRLAHLLRQEEIKWYQRAKTRRIMEGDRNTKYYHMIAN 1363
>Os05g0241800
Length = 444
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 46/54 (85%)
Query: 96 SEIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
+ ++ EEL+ K+ M++RLA LLREEE+KWYQRAKTK +LEGD NTKY+H++AN
Sbjct: 78 TRLLISEELDRKNAMKDRLAKLLREEELKWYQRAKTKRVLEGDRNTKYYHMIAN 131
>Os08g0378200
Length = 831
Score = 74.7 bits (182), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 6 KRAEKIKAGRNLEVQNVKDKVISSSFSKLGFIDANNDSNFVNAIKDIRTLEEARLSDCIS 65
+RAEK+KA +NLE N++ IS+S LG I ++ + + I D+R++EE RLSD +
Sbjct: 551 QRAEKLKADKNLE--NLQ---ISASIKNLGIITSSPNVVLDDVINDLRSMEENRLSDHVR 605
Query: 66 LKDKHNSTVFPENELTDDQLEDNSVLEKLCSEIMEEEELNAK 107
L + + +L DD +DN +L+ LCSEIMEE L+++
Sbjct: 606 LSTTKGFSNNVDGDLVDDHFDDNFLLQHLCSEIMEETTLDSR 647
>Os05g0294900
Length = 571
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 91 LEKLC-SEIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
L+KL + I+ +EL+ K+ +N LA LLREEE+KWYQRAKTK I+EGD NTKY+H++AN
Sbjct: 239 LDKLAETRILTSQELDLKNSCKNALAQLLREEEVKWYQRAKTKRIVEGDRNTKYYHMIAN 298
>Os05g0303900
Length = 1196
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 91 LEKLC-SEIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
L+KL + I+ +EL K+ +N LA LLREEE+KWYQRAKTK I+EGD NTKY+H++AN
Sbjct: 744 LDKLAETRILTSQELILKNSYKNALAQLLREEEVKWYQRAKTKRIVEGDRNTKYYHMIAN 803
>Os11g0312100
Length = 1396
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 91 LEKLC-SEIMEEEELNAKHYMRNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVAN 149
L+KL + I+ +EL+ K+ +N LA LLREEE+KWYQRAKTK I+ GD NTKY+H++ N
Sbjct: 877 LDKLAETRILTSQELDLKNSCKNALAQLLREEEVKWYQRAKTKRIV-GDRNTKYYHMITN 935
>Os07g0235600
Length = 1250
Score = 64.7 bits (156), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 94 LCSEIMEEEELNAKHYM--RNRLAFLLREEEIKWYQRAKTKDILEGDSNTKYFHLVANVQ 151
+ +E+ E + +H R++L+ L REEEIKWYQRAK D+L GD+NTKY+H+VAN +
Sbjct: 1050 ITAEVRELTDSEREHLAQSRDQLSRLFREEEIKWYQRAKVTDVLLGDNNTKYYHMVANGK 1109
Query: 152 R 152
+
Sbjct: 1110 K 1110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,625,723
Number of extensions: 172831
Number of successful extensions: 508
Number of sequences better than 1.0e-10: 21
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 21
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)