BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0375400 Os01g0375400|Os01g0375400
(194 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0375400 Similar to Dehydroquinate dehydratase/shikimat... 399 e-112
Os01g0375200 Similar to Dehydroquinate dehydratase/shikimat... 167 4e-42
>Os01g0375400 Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase
(EC 4.2.1.10) (EC 1.1.1.25)
Length = 194
Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MELGVNYVDIELKVADKFISFIYGSKPEKCKLIVSAHNYESTPSCEELADLVARIQAVGA 60
MELGVNYVDIELKVADKFISFIYGSKPEKCKLIVSAHNYESTPSCEELADLVARIQAVGA
Sbjct: 1 MELGVNYVDIELKVADKFISFIYGSKPEKCKLIVSAHNYESTPSCEELADLVARIQAVGA 60
Query: 61 DIVKIATTANDIVDVSQMFQVMVHCQTVQKNLPKIDRRLNANRLCAEVTLISADSLANVA 120
DIVKIATTANDIVDVSQMFQVMVHCQTVQKNLPKIDRRLNANRLCAEVTLISADSLANVA
Sbjct: 61 DIVKIATTANDIVDVSQMFQVMVHCQTVQKNLPKIDRRLNANRLCAEVTLISADSLANVA 120
Query: 121 AEPIPSSTWQGLNTNRIGAKLLISVPISGAELWDLAARSWATQHNSYVGRPRGAEPSNLS 180
AEPIPSSTWQGLNTNRIGAKLLISVPISGAELWDLAARSWATQHNSYVGRPRGAEPSNLS
Sbjct: 121 AEPIPSSTWQGLNTNRIGAKLLISVPISGAELWDLAARSWATQHNSYVGRPRGAEPSNLS 180
Query: 181 ANVIGNDPKDLSAN 194
ANVIGNDPKDLSAN
Sbjct: 181 ANVIGNDPKDLSAN 194
>Os01g0375200 Similar to Dehydroquinate dehydratase/shikimate dehydrogenase
precursor (EC 1.1.1.25) (EC 4.2.1.10) (Fragment)
Length = 572
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 84/86 (97%)
Query: 1 MELGVNYVDIELKVADKFISFIYGSKPEKCKLIVSAHNYESTPSCEELADLVARIQAVGA 60
MELGV+YVDIELKVADKFISFI GSKPEKCKLIVS+HNYESTPSCEELADLVARIQAVG+
Sbjct: 149 MELGVDYVDIELKVADKFISFISGSKPEKCKLIVSSHNYESTPSCEELADLVARIQAVGS 208
Query: 61 DIVKIATTANDIVDVSQMFQVMVHCQ 86
DIVKIATTA+DI DVS+MFQVMVHCQ
Sbjct: 209 DIVKIATTASDIADVSRMFQVMVHCQ 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,129,552
Number of extensions: 226401
Number of successful extensions: 641
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 2
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)