Os01g0375400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase (EC 4.2.1.10) (EC 1.1.1.25).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0375400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase (EC 4.2.1.10) (EC 1.1.1.25).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.79 | 0.273 | 2.87 | -0.0831 | 0.0404 | -0.269 | 0.059 | 1.21 | 0.0308 | 13 | 1.001 | 16 | -- | -- |
| 35.02 | 0.276 | 2.86 | -0.0383 | 0.0378 | -0.182 | 0.145 | -- | 0.0438 | 12.7 | 1.1 | 16 | -- | -- |
| 33.8 | 0.271 | 2.87 | -0.0815 | 0.0399 | -0.267 | -- | 1.24 | 0.0307 | 12.6 | 1.016 | 16 | -- | -- |
| 35.1 | 0.276 | 2.86 | -0.0316 | 0.0375 | -0.173 | -- | -- | 0.0433 | 11.2 | 1.1 | 16 | -- | -- |
| 33.89 | 0.271 | 2.87 | -0.0805 | -- | -0.253 | -- | 1.23 | 0.0301 | -- | 1.038 | 16 | -- | -- |
| 35.71 | 0.28 | 2.86 | -0.0102 | 0.0499 | -- | -0.173 | -- | 0.0415 | 5.57 | -- | -- | -- | -- |
| 35.75 | 0.28 | 2.86 | -0.0103 | 0.0545 | -- | -- | -- | 0.0425 | 7.25 | -- | -- | -- | -- |
| 35.19 | 0.276 | 2.86 | -0.0314 | -- | -0.167 | -- | -- | 0.044 | -- | 1.014 | 16 | -- | -- |
| 35.13 | 0.276 | 2.86 | -- | 0.0385 | -0.169 | -- | -- | 0.0477 | 11.1 | 1.014 | 16 | -- | -- |
| 35.91 | 0.28 | 2.86 | -0.00937 | -- | -- | -- | -- | 0.0434 | -- | -- | -- | -- | -- |
| 35.76 | 0.28 | 2.86 | -- | 0.0544 | -- | -- | -- | 0.0436 | 7.26 | -- | -- | -- | -- |
| 35.22 | 0.276 | 2.86 | -- | -- | -0.163 | -- | -- | 0.0474 | -- | 1 | 16 | -- | -- |
| 35.91 | 0.28 | 2.86 | -- | -- | -- | -- | -- | 0.0445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.35 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 2 | 29.36 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 29.39 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 5 | 29.39 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 7 | 29.40 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 11 | 29.41 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 17 | 29.43 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 19 | 29.44 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 21 | 29.44 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 23 | 29.44 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 27 | 29.44 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 29 | 29.44 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 34 | 29.44 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 35 | 29.44 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 36 | 29.44 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 38 | 29.44 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 43 | 29.44 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 48 | 29.56 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 50 | 29.63 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 52 | 29.68 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 56 | 29.68 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 60 | 29.69 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 61 | 29.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 64 | 29.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 68 | 29.69 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 77 | 29.69 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 78 | 29.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 98 | 29.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 114 | 29.77 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 154 | 30.04 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 171 | 30.33 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 172 | 30.33 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 181 | 30.86 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 200 | 31.84 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 208 | 32.17 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 209 | 32.20 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 248 | 32.46 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 280 | 32.79 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 322 | 32.83 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 339 | 32.97 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 362 | 33.14 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 427 | 33.40 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 512 | 33.68 | wind | 1.0 | 10 | > th | dose independent | sin | 14 | NA |
| 526 | 33.71 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 532 | 33.71 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 534 | 33.71 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 554 | 33.71 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 555 | 33.71 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 561 | 33.71 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 563 | 33.71 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 592 | 33.73 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 613 | 33.78 | radiation | 40.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 742 | 33.93 | humidity | 50.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 798 | 33.99 | wind | 3.0 | 30 | < th | dose dependent | rect. | 22 | 5 |
| 832 | 34.04 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 834 | 34.05 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 12 |
| 839 | 34.05 | wind | 3.0 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 852 | 34.08 | wind | 1.0 | 10 | > th | dose independent | no | NA | NA |
| 860 | 34.09 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 10 |
| 873 | 34.10 | wind | 3.0 | 30 | < th | dose dependent | rect. | 13 | 14 |
| 906 | 34.13 | radiation | 40.0 | 30 | > th | dose dependent | sin | 13 | NA |
| 922 | 34.14 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 950 | 34.18 | wind | 1.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 978 | 34.21 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 988 | 34.22 | temperature | 30.0 | 30 | > th | dose independent | rect. | 13 | 1 |