BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0367400 Os01g0367400|AK063804
         (288 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0367400  Conserved hypothetical protein                      500   e-142
Os01g0367100  Conserved hypothetical protein                      206   1e-53

>Os01g0367400 Conserved hypothetical protein
          Length = 288

 Score =  500 bits (1288), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/288 (85%), Positives = 247/288 (85%)

Query: 1   MPQAGRTPHHVILMSCSFRFHSSALPAAAAXXXXXXXXXXXXXXXXXXNTFSPTLSIXXX 60
           MPQAGRTPHHVILMSCSFRFHSSALPAAAA                  NTFSPTLSI   
Sbjct: 1   MPQAGRTPHHVILMSCSFRFHSSALPAAAARLHLSRGLRPPPSRRRLHNTFSPTLSISPP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXSAMAVSASEGVGQYDLLIVGPGVLGRIVAERWQQEHPGCK 120
                               SAMAVSASEGVGQYDLLIVGPGVLGRIVAERWQQEHPGCK
Sbjct: 61  SRHAAIAAAAASPLGASQEASAMAVSASEGVGQYDLLIVGPGVLGRIVAERWQQEHPGCK 120

Query: 121 IFGHTATTDHHSELTQLGIIPSLKGPAVQKVPYVIFCAPPYRTDDYPGDLRVAASNWNGQ 180
           IFGHTATTDHHSELTQLGIIPSLKGPAVQKVPYVIFCAPPYRTDDYPGDLRVAASNWNGQ
Sbjct: 121 IFGHTATTDHHSELTQLGIIPSLKGPAVQKVPYVIFCAPPYRTDDYPGDLRVAASNWNGQ 180

Query: 181 GSFLFTSSTAVYDCSDNGLCSEDAASLAIAIMKRRLRARVFVGCDNQPLSRQEIMDLVNR 240
           GSFLFTSSTAVYDCSDNGLCSEDAASLAIAIMKRRLRARVFVGCDNQPLSRQEIMDLVNR
Sbjct: 181 GSFLFTSSTAVYDCSDNGLCSEDAASLAIAIMKRRLRARVFVGCDNQPLSRQEIMDLVNR 240

Query: 241 SGKFDTKFQGFTGTDGPLGKRMENSKTRAEIGWQPKYPSFTEFLGLSN 288
           SGKFDTKFQGFTGTDGPLGKRMENSKTRAEIGWQPKYPSFTEFLGLSN
Sbjct: 241 SGKFDTKFQGFTGTDGPLGKRMENSKTRAEIGWQPKYPSFTEFLGLSN 288



>Os01g0367100 Conserved hypothetical protein
          Length = 340

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/147 (65%), Positives = 119/147 (80%), Gaps = 4/147 (2%)

Query: 81  SAMAVSASEGVGQYDLLIVGPGVLGRIVAERWQQEHPGCKIFGHTATTDHHSELTQLGII 140
           + + ++ S+ VG+ DLLIVGPGVLGR+VAE+WQ+EHPGCK+FG TA+TDHH+EL+ +GII
Sbjct: 65  TGVKMAGSDIVGKNDLLIVGPGVLGRLVAEKWQEEHPGCKVFGQTASTDHHNELSNIGII 124

Query: 141 PSLKGPAV-QKVPYVIFCAPPYRTDDYPGDLRVAASNWNGQGSFLFTSSTAVYDCSDNGL 199
           PSLKG    QKVPYVIFCAPP R+DDYPGD+RVAASNW G+GSF+FTSSTA+YDCSDN L
Sbjct: 125 PSLKGSTFPQKVPYVIFCAPPSRSDDYPGDVRVAASNWTGEGSFVFTSSTALYDCSDNEL 184

Query: 200 CSEDAASLAIAIMKRRLRARVFVGCDN 226
           C+ED  S+ I    R  R  V +  +N
Sbjct: 185 CNEDCPSVPIG---RSPRTDVLLKAEN 208




 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 84/92 (91%)

Query: 197 NGLCSEDAASLAIAIMKRRLRARVFVGCDNQPLSRQEIMDLVNRSGKFDTKFQGFTGTDG 256
           N +  EDAASLAIAIMK+  R R+F+GCDN+PLSRQEIMD VNRSGKFDTKFQGFTGTDG
Sbjct: 249 NQIHYEDAASLAIAIMKKGHRGRIFLGCDNKPLSRQEIMDSVNRSGKFDTKFQGFTGTDG 308

Query: 257 PLGKRMENSKTRAEIGWQPKYPSFTEFLGLSN 288
           PLGK+MENS+TR+EIGW+PKYPSFTEFLGL +
Sbjct: 309 PLGKKMENSRTRSEIGWEPKYPSFTEFLGLDS 340



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,050,854
Number of extensions: 343116
Number of successful extensions: 598
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 3
Length of query: 288
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 188
Effective length of database: 11,814,401
Effective search space: 2221107388
Effective search space used: 2221107388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)