Os01g0367400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0367400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.47 | 0.344 | 11 | -0.784 | 1.99 | 0.954 | -0.348 | 2.7 | -0.389 | 21.6 | 8.238 | 336 | -- | -- |
| 55.02 | 0.345 | 11.1 | -1.08 | 1.91 | 0.899 | -0.203 | -- | -0.452 | 21.7 | 22.91 | 375 | -- | -- |
| 53.86 | 0.342 | 11 | -0.777 | 2 | 0.949 | -- | 2.67 | -0.39 | 21.6 | 9.413 | 313 | -- | -- |
| 54.96 | 0.345 | 11.1 | -1.15 | 1.95 | 0.898 | -- | -- | -0.484 | 21.7 | 22.57 | 339 | -- | -- |
| 229.08 | 0.705 | 11 | -1.22 | -- | 2.49 | -- | 2.08 | -0.646 | -- | -6.498 | 677 | -- | -- |
| 69.69 | 0.391 | 11.1 | -0.98 | 2.13 | -- | -0.152 | -- | -0.357 | 21.1 | -- | -- | -- | -- |
| 69.77 | 0.391 | 11.1 | -0.975 | 2.13 | -- | -- | -- | -0.357 | 21.1 | -- | -- | -- | -- |
| 208.53 | 0.673 | 11 | -1.45 | -- | 2.1 | -- | -- | -0.594 | -- | 24.1 | 699 | -- | -- |
| 88.34 | 0.438 | 11.1 | -- | 1.99 | 0.607 | -- | -- | -0.305 | 21.6 | 23.98 | 339 | -- | -- |
| 332.81 | 0.852 | 11 | -0.969 | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
| 94.81 | 0.455 | 11 | -- | 2.13 | -- | -- | -- | -0.248 | 21.1 | -- | -- | -- | -- |
| 259.4 | 0.75 | 11 | -- | -- | 1.82 | -- | -- | -0.393 | -- | 24.4 | 681 | -- | -- |
| 357.58 | 0.883 | 11 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 2 | 51.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 5 | 52.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 18 | 52.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 28 | 52.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 42 | 52.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 45 | 52.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 46 | 52.97 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 75 | 53.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 132 | 53.45 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 146 | 53.51 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 13 |
| 147 | 53.51 | wind | 9 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 189 | 53.64 | wind | 9 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 199 | 53.65 | temperature | 20 | 720 | > th | dose dependent | sin | 23 | NA |
| 217 | 53.71 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 226 | 53.73 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 227 | 53.73 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 251 | 53.80 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 258 | 53.81 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 264 | 53.82 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 10 |
| 366 | 54.10 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 435 | 54.24 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 440 | 54.25 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 544 | 54.45 | wind | 5 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 614 | 54.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 624 | 54.59 | temperature | 25 | 270 | > th | dose independent | sin | 21 | NA |
| 634 | 54.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 636 | 54.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 637 | 54.60 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 19 |
| 642 | 54.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 651 | 54.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 658 | 54.63 | wind | 5 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 659 | 54.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 661 | 54.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 693 | 54.71 | temperature | 25 | 720 | > th | dose independent | sin | 0 | NA |
| 725 | 54.78 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 20 |
| 746 | 54.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 755 | 54.84 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 776 | 54.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 809 | 54.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 815 | 54.94 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 840 | 54.98 | wind | 9 | 14400 | > th | dose dependent | sin | 11 | NA |
| 892 | 55.07 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 943 | 55.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 969 | 55.20 | wind | 5 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 998 | 55.23 | temperature | 25 | 270 | < th | dose independent | sin | 21 | NA |