BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0335600 Os01g0335600|AK070305
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0335600 Conserved hypothetical protein 340 6e-94
Os01g0336300 Protein of unknown function DUF594 family protein 298 2e-81
Os01g0333600 170 7e-43
Os01g0333700 103 9e-23
Os01g0345466 67 7e-12
>Os01g0335600 Conserved hypothetical protein
Length = 213
Score = 340 bits (871), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 172/213 (80%), Positives = 172/213 (80%)
Query: 1 MAMLGHYIRHEPQWRRCRRAHAALDAVLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSE 60
MAMLGHYIRHEPQWRRCRRAHAALDAVLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSE
Sbjct: 1 MAMLGHYIRHEPQWRRCRRAHAALDAVLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSE 60
Query: 61 KLYGRAGLMRSVEVSPAVKDAVLXXXXXXXXXXXXXXXXXXXXXXKVDWLWYGSRKSWAS 120
KLYGRAGLMRSVEVSPAVKDAVL KVDWLWYGSRKSWAS
Sbjct: 61 KLYGRAGLMRSVEVSPAVKDAVLRSLMSSYGRSSRGRAAERRVGSKVDWLWYGSRKSWAS 120
Query: 121 DDGDGCVSTTDIILAWHVATRLYEMRCXXXXXXXXXXXXXXXXXXXCHLSNYCAYLASAA 180
DDGDGCVSTTDIILAWHVATRLYEMRC CHLSNYCAYLASAA
Sbjct: 121 DDGDGCVSTTDIILAWHVATRLYEMRCSLHASSPTPSASSSDMAAACHLSNYCAYLASAA 180
Query: 181 PELLPDIATWTEKRYREVTADVTAGAGQGQRRR 213
PELLPDIATWTEKRYREVTADVTAGAGQGQRRR
Sbjct: 181 PELLPDIATWTEKRYREVTADVTAGAGQGQRRR 213
>Os01g0336300 Protein of unknown function DUF594 family protein
Length = 724
Score = 298 bits (762), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/206 (74%), Positives = 157/206 (76%), Gaps = 3/206 (1%)
Query: 1 MAMLGHYIRHEPQWRRCRRAHAALDAVLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSE 60
MA+LGHYIRHEPQWRRCRRAHAALDA+LRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSE
Sbjct: 402 MALLGHYIRHEPQWRRCRRAHAALDAMLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSE 461
Query: 61 KLYGRAGLMRSVEVSPAVKDAVLXXXXXXXXXXXXXXXXXXX--XXXKVDWLWYGSRKSW 118
KLYGRAGLMRSVEVSPAVKD VL KVDWLWYGSRKSW
Sbjct: 462 KLYGRAGLMRSVEVSPAVKDTVLRSLMSSYGRSSRGSVSAAERRVGGKVDWLWYGSRKSW 521
Query: 119 ASDDGDGCVSTTDIILAWHVATRLYEMRCXXXXXXXXXXXXXXXXXXXCHLSNYCAYLAS 178
A DDGDGCVSTTDIILAWHVATRLYEMRC CHLS YCAYLAS
Sbjct: 522 ACDDGDGCVSTTDIILAWHVATRLYEMRC-SLHASPTPSPSSPDMAAACHLSYYCAYLAS 580
Query: 179 AAPELLPDIATWTEKRYREVTADVTA 204
AAPELL D A WTEKRY+E+TADVTA
Sbjct: 581 AAPELLLDSAAWTEKRYKELTADVTA 606
>Os01g0333600
Length = 723
Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 119/209 (56%), Gaps = 17/209 (8%)
Query: 1 MAMLGHYIRHEPQWRRCRRAHAALDAVLR-FRPARRWRNKIGQNSVLEPRRFCRRSGLLS 59
MA+L HYIRH+ WRR R H+ALDAVLR FRPARRWR+KIGQNSVLEPRRF +R+G L+
Sbjct: 417 MALLAHYIRHDSPWRRFRFVHSALDAVLRWFRPARRWRDKIGQNSVLEPRRFRKRNGFLA 476
Query: 60 EKLYGRAGLMRSVEVSPAVKDAVLXXXXXXXXXXXXXXXXXXXXXXKVDWLWYGSRKSWA 119
EK YGRAGLM SV VS V +A+ SR+
Sbjct: 477 EKFYGRAGLMESVGVSLIVIEAMYRSFRNIYGLRTNELASRRNSES-------ASRRQRR 529
Query: 120 SDDGDGCVSTTDIILAWHVATRLYEMRCXXXXXXXXXXXXXXXXXXXCHLSNYCAYLASA 179
+ + + TD ILAWHVATRL+E+ CHLS YCAYL +A
Sbjct: 530 QGEFE-FDTVTDKILAWHVATRLFEI--------THARTSPDNKIVACHLSYYCAYLVAA 580
Query: 180 APELLPDIATWTEKRYREVTADVTAGAGQ 208
PELLPD WT+KRY++V DV A G
Sbjct: 581 VPELLPDCPAWTQKRYKKVATDVRAVLGS 609
>Os01g0333700
Length = 367
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Query: 27 VLRFRPARRWRNKIGQNSVLEPRRFCRRSGLLSEKLYGRAGLMRSVEVSPAVKDAVLXXX 86
VLRFR +R+ +K+GQNSVL+PRRF +L +K+ RA L +S V VK AVL
Sbjct: 2 VLRFRAVQRFNDKMGQNSVLQPRRFHNPPIVLPKKMVHRASLHKSANVPTQVKAAVLAAL 61
Query: 87 XXXXXXXXXXXXXXXXXXXKVDWLWYGSRKSWASDDGDGCVSTTDIILAWHVATRLYEMR 146
+ +W S GD V T ++IL WH+ T L+EM+
Sbjct: 62 KRSNGRLSNGVAAIQRSTLRDTVIW--------SCQGDHIV-TANVILVWHIGTSLFEMK 112
Query: 147 CXXXXXXXXXXXXXXXXXXXCHLSNYCAYLASAAPELLPDIATWTEKRYREVTADV 202
HLS YCAYL +A PELLP+ ATWT+ +EV D+
Sbjct: 113 ----YLRIKSSPRTADMITATHLSQYCAYLVAAVPELLPNDATWTKAHCKEVARDI 164
>Os01g0345466
Length = 715
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 18/205 (8%)
Query: 11 EPQWRRCRRAHAALDAVL--RFRPARRWRNKIGQNSVLEPRRFCRRSGLLSEKLYGRAGL 68
+P W++ R + L R + W +K+G S+L+P C+R G + L+ +
Sbjct: 428 KPSWQKSRIMRRLIACFLWCRCKLMNYWGDKMGMTSLLDP---CKRKGHI-RHLFRLSKA 483
Query: 69 MRSVEVSPAVKDAVLXXXXXXXXXXXXXXXXXXXXXXKVDWLWYGSRKSWASDDGDGCVS 128
M+ ++ VK A++ + D W + +G+G
Sbjct: 484 MKPTKIPKPVKAALINSLKGSNGQLSNGIASLQKCHLRDDIRW--------ACNGEG--- 532
Query: 129 TTDIILAWHVATRLYEMR-CXXXXXXXXXXXXXXXXXXXCHLSNYCAYLASAAPELLPDI 187
T+DIIL WH+AT ++E+R HLS YCAYL ++ PELLPD
Sbjct: 533 TSDIILVWHIATCIFEIRHMHDPSERHSSPDENDDMITAIHLSKYCAYLLASCPELLPDD 592
Query: 188 ATWTEKRYREVTADVTAGAGQGQRR 212
W+++ Y+ + G R
Sbjct: 593 TPWSKELYKSAKKITDSVLGSTDMR 617
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.135 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,664,939
Number of extensions: 217132
Number of successful extensions: 840
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 6
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)