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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0336300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.57 (0.0471) R2 : 0.721
β1 : 1.93 (0.172) R2dD : 0.0797 R2D : 0.073
β2 : 2.69 (0.114) R2dC : 0.353 R2C : 0.443
β3 : -2.9 (0.164) R2dE : 0.199 R2E : 0.292
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0106 (0.1) R2dN8 : 8.51e-06 R2N8 : -0.00175
σ : 0.879
deviance : 356.31
__
_____
C
peak time of C : 10.7
E
wheather : radiation
threshold : 0.7045
memory length : 74
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.46 0.876 5.57 1.94 2.7 -2.94 -1.06 -2.11 0.00302 10.7 0.7129 82 19.9 --
353.3 0.875 5.57 1.96 2.69 -2.93 -0.862 -- 0.00615 10.7 0.6937 76 20.1 --
351.38 0.873 5.58 1.91 2.7 -2.91 -- -1.99 0.00868 10.8 0.6363 77 19.8 --
356.31 0.879 5.57 1.93 2.69 -2.9 -- -- 0.0106 10.7 0.7045 74 20.1 --
453.81 0.992 5.63 1.84 -- -3.03 -- 0.631 -0.0457 -- 2.701 64 5.35 --
521.55 1.07 5.55 2.01 3.23 -- -0.366 -- 0.122 12.2 -- -- -- --
522.13 1.07 5.55 2 3.23 -- -- -- 0.121 12.2 -- -- -- --
448.82 0.987 5.64 2 -- -3.07 -- -- -0.0546 -- 7.12 50 5.2 --
453.01 0.991 5.63 -- 2.66 -2.98 -- -- -0.188 10.8 0.5286 76 19.8 --
1179.71 1.6 5.62 1.89 -- -- -- -- 0.0721 -- -- -- -- --
627.1 1.17 5.6 -- 3.21 -- -- -- -0.101 12.2 -- -- -- --
554.93 1.1 5.7 -- -- -3.05 -- -- -0.215 -- 5.661 52 5.35 --
1273.99 1.67 5.67 -- -- -- -- -- -0.138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 353.48 radiation 1.0 90 < th dose dependent sin 2 NA
2 356.55 radiation 1.0 90 < th dose dependent rect. 23 23
4 360.32 radiation 1.0 90 < th dose independent rect. 23 23
5 361.28 radiation 1.0 90 < th dose dependent rect. 1 18
6 364.77 temperature 15.0 90 > th dose dependent rect. 1 4
7 364.98 radiation 1.0 90 < th dose dependent rect. 1 20
12 365.76 radiation 1.0 90 > th dose independent rect. 4 14
23 367.37 radiation 1.0 90 < th dose dependent rect. 1 16
26 368.20 radiation 1.0 90 < th dose independent rect. 14 18
31 368.68 radiation 1.0 90 < th dose dependent rect. 14 18
38 369.18 radiation 1.0 90 < th dose independent rect. 1 16
58 370.91 radiation 1.0 90 < th dose independent rect. 17 23
59 370.94 temperature 15.0 270 > th dose dependent rect. 1 1
64 371.05 radiation 1.0 90 < th dose independent sin 3 NA
71 371.35 radiation 1.0 90 < th dose independent rect. 1 18
77 371.56 radiation 1.0 90 > th dose independent sin 3 NA
82 371.72 radiation 1.0 90 < th dose independent no NA NA
83 371.86 radiation 1.0 90 > th dose independent no NA NA
142 372.56 radiation 1.0 90 < th dose dependent no NA NA
144 372.92 radiation 1.0 90 < th dose dependent rect. 17 23
145 373.09 temperature 20.0 90 > th dose independent rect. 1 4
159 373.48 radiation 1.0 90 < th dose dependent rect. 1 7
161 373.51 radiation 1.0 90 < th dose dependent rect. 1 11
162 373.54 radiation 1.0 90 < th dose independent rect. 6 23
175 374.96 radiation 1.0 90 < th dose independent rect. 1 7
178 374.98 radiation 1.0 90 < th dose independent rect. 1 11
187 375.75 radiation 1.0 90 < th dose dependent rect. 6 23
212 379.78 wind 9.0 90 < th dose dependent rect. 1 4
213 379.80 temperature 20.0 270 > th dose independent rect. 1 1
216 380.19 radiation 20.0 720 < th dose independent rect. 5 2
223 380.78 humidity 60.0 90 > th dose dependent rect. 1 4
233 381.50 humidity 80.0 90 > th dose independent rect. 1 4
237 381.71 radiation 20.0 720 < th dose independent rect. 21 10
238 381.71 precipitation 0.1 90 < th dose independent rect. 5 20
239 381.71 precipitation 0.1 90 < th dose dependent rect. 5 20
241 381.82 radiation 1.0 90 < th dose independent rect. 17 15
288 383.68 precipitation 0.1 90 < th dose independent rect. 1 4
289 383.68 precipitation 0.1 90 < th dose dependent rect. 1 4
295 383.93 wind 3.0 90 < th dose independent rect. 1 4
296 383.95 radiation 1.0 90 < th dose independent rect. 1 4
311 384.52 wind 7.0 90 < th dose independent rect. 1 4
313 384.62 temperature 10.0 90 > th dose independent rect. 1 4
315 384.62 temperature 30.0 90 < th dose independent rect. 1 4
316 384.62 humidity 50.0 90 > th dose independent rect. 1 4
319 384.62 atmosphere 995.0 90 > th dose independent rect. 1 4
320 384.62 atmosphere 1010.0 90 < th dose independent rect. 1 4
325 384.62 temperature 10.0 90 > th dose independent rect. 5 20
327 384.67 temperature 10.0 720 > th dose dependent rect. 5 2
346 385.95 humidity 70.0 720 > th dose independent rect. 19 14
372 387.22 radiation 40.0 90 < th dose independent rect. 5 20
377 387.71 wind 9.0 90 < th dose independent rect. 5 20
387 388.27 radiation 40.0 720 < th dose dependent rect. 5 2
392 388.47 wind 9.0 720 < th dose independent rect. 17 2
393 388.50 temperature 15.0 10 > th dose dependent rect. 1 5
403 390.07 radiation 20.0 720 < th dose independent rect. 17 2
408 390.34 humidity 70.0 720 > th dose independent rect. 5 2
414 390.69 humidity 80.0 270 > th dose independent rect. 1 1
415 390.84 radiation 30.0 90 < th dose dependent rect. 15 14
416 390.86 wind 1.0 720 > th dose independent rect. 17 2
428 391.64 temperature 10.0 720 > th dose independent rect. 17 2
429 391.64 atmosphere 1015.0 720 < th dose independent rect. 17 2
432 391.64 temperature 10.0 720 > th dose independent rect. 19 22
438 392.14 wind 7.0 720 < th dose independent rect. 5 2
440 392.14 temperature 10.0 720 > th dose independent rect. 5 2
441 392.14 temperature 30.0 720 < th dose independent rect. 5 2
442 392.14 humidity 50.0 720 > th dose independent rect. 5 2
444 392.14 atmosphere 995.0 720 > th dose independent rect. 5 2
445 392.14 atmosphere 1015.0 720 < th dose independent rect. 5 2
447 392.14 temperature 10.0 720 > th dose independent rect. 7 22
453 392.36 precipitation 0.1 720 < th dose independent rect. 5 2
454 392.36 precipitation 0.1 720 < th dose dependent rect. 5 2
457 392.78 wind 9.0 270 < th dose independent rect. 24 13
460 393.23 atmosphere 1015.0 270 < th dose independent rect. 24 13
461 393.33 temperature 10.0 270 > th dose independent rect. 13 11
462 393.33 temperature 10.0 270 > th dose independent rect. 24 13
463 393.33 atmosphere 995.0 270 > th dose independent rect. 24 13
465 393.38 wind 9.0 720 < th dose independent rect. 7 22
466 393.46 radiation 40.0 720 < th dose dependent rect. 21 10
471 393.64 radiation 40.0 720 < th dose independent rect. 19 14
472 393.67 radiation 10.0 90 < th dose dependent rect. 17 12
478 393.84 wind 9.0 270 < th dose dependent rect. 1 1
483 394.09 humidity 70.0 720 > th dose independent rect. 21 10
487 394.24 humidity 50.0 270 > th dose dependent rect. 1 1
494 394.74 precipitation 0.1 720 < th dose independent rect. 17 2
495 394.74 precipitation 0.1 720 < th dose dependent rect. 17 2
508 395.41 precipitation 0.1 270 < th dose independent rect. 1 1
509 395.41 precipitation 0.1 270 < th dose dependent rect. 1 1
520 395.76 temperature 10.0 720 > th dose dependent rect. 17 2
523 395.98 wind 7.0 270 < th dose independent rect. 1 1
524 396.00 temperature 10.0 270 > th dose independent rect. 1 1
526 396.00 temperature 30.0 270 < th dose independent rect. 1 1
527 396.00 humidity 50.0 270 > th dose independent rect. 1 1
530 396.00 atmosphere 995.0 270 > th dose independent rect. 1 1
531 396.00 atmosphere 1010.0 270 < th dose independent rect. 1 1
533 396.00 radiation 1.0 270 < th dose independent rect. 1 1
538 396.00 temperature 10.0 270 > th dose independent rect. 2 23
539 396.00 radiation 1.0 270 < th dose dependent rect. 1 1
545 396.07 radiation 1.0 720 < th dose dependent rect. 23 6
556 396.65 temperature 10.0 720 > th dose independent rect. 9 10
557 396.65 atmosphere 1015.0 720 < th dose independent rect. 9 10
558 396.65 temperature 10.0 720 > th dose independent rect. 19 14
560 396.65 atmosphere 995.0 720 > th dose independent rect. 19 14
565 396.70 atmosphere 1015.0 720 < th dose independent rect. 7 14
579 397.23 humidity 70.0 720 > th dose independent rect. 19 6
581 397.27 temperature 10.0 720 > th dose independent rect. 21 10
582 397.27 temperature 30.0 720 < th dose independent rect. 21 10
583 397.27 humidity 50.0 720 > th dose independent rect. 21 10
585 397.27 atmosphere 995.0 720 > th dose independent rect. 21 10
587 397.27 temperature 10.0 720 > th dose independent rect. 7 14
588 397.29 wind 9.0 720 < th dose independent rect. 19 14
593 397.68 wind 9.0 720 < th dose independent rect. 21 10
605 397.93 wind 9.0 90 < th dose dependent rect. 17 12
606 397.95 radiation 1.0 90 > th dose independent rect. 13 23
629 398.50 wind 9.0 720 < th dose independent rect. 17 18
656 398.96 atmosphere 995.0 90 > th dose independent rect. 5 20
657 398.96 temperature 10.0 270 > th dose independent rect. 3 21
667 398.99 precipitation 0.1 270 < th dose independent rect. 3 21
668 398.99 precipitation 0.1 270 < th dose dependent rect. 3 21
669 399.06 precipitation 0.1 270 < th dose independent rect. 24 13
670 399.06 precipitation 0.1 270 < th dose dependent rect. 24 13
682 399.82 wind 9.0 720 < th dose independent rect. 17 10
688 400.20 temperature 10.0 720 > th dose independent rect. 5 10
689 400.20 atmosphere 1015.0 720 < th dose independent rect. 5 10
690 400.20 temperature 10.0 720 > th dose independent rect. 15 14
704 400.71 temperature 10.0 720 > th dose independent rect. 23 6
705 400.71 temperature 30.0 720 < th dose independent rect. 23 6
706 400.71 humidity 50.0 720 > th dose independent rect. 23 6
709 400.71 atmosphere 995.0 720 > th dose independent rect. 23 6
710 400.71 radiation 20.0 720 < th dose independent rect. 23 6
713 400.71 temperature 10.0 720 > th dose independent rect. 5 18
715 400.77 wind 9.0 720 < th dose independent rect. 23 6
718 400.96 radiation 40.0 720 < th dose dependent rect. 23 6
725 401.10 radiation 20.0 720 < th dose independent rect. 17 10
750 401.27 wind 5.0 10 < th dose dependent rect. 1 5
755 401.50 wind 9.0 270 < th dose independent rect. 13 11
756 401.57 temperature 10.0 720 > th dose independent rect. 11 6
757 401.57 atmosphere 1015.0 720 < th dose independent rect. 11 6
758 401.57 temperature 10.0 720 > th dose independent rect. 17 18
759 401.60 atmosphere 995.0 90 > th dose dependent rect. 1 4
767 401.88 temperature 20.0 10 > th dose independent rect. 1 5
771 402.04 precipitation 0.1 270 < th dose independent rect. 13 11
772 402.04 precipitation 0.1 270 < th dose dependent rect. 13 11
775 402.26 radiation 40.0 720 < th dose dependent rect. 17 2
778 402.41 temperature 10.0 720 > th dose independent rect. 17 10
781 402.41 temperature 10.0 720 > th dose independent rect. 3 14
783 402.45 radiation 1.0 720 < th dose independent rect. 23 6
785 402.47 wind 9.0 720 < th dose independent rect. 15 14
787 402.60 precipitation 0.1 720 < th dose independent rect. 5 10
788 402.60 precipitation 0.1 720 < th dose dependent rect. 5 10
789 402.62 humidity 60.0 10 > th dose dependent rect. 1 5
793 402.79 radiation 40.0 720 < th dose independent rect. 15 14
796 402.92 atmosphere 1015.0 90 < th dose dependent rect. 1 4
799 403.06 humidity 80.0 10 > th dose independent rect. 1 5
802 403.10 radiation 40.0 90 < th dose independent rect. 5 6
812 403.45 radiation 10.0 10 < th dose independent rect. 1 5
813 403.45 wind 9.0 720 < th dose independent rect. 9 10
823 403.68 radiation 20.0 270 < th dose independent rect. 19 13
830 403.86 wind 7.0 90 < th dose independent rect. 17 12
850 404.17 humidity 50.0 90 > th dose independent rect. 17 12
886 404.52 atmosphere 995.0 720 > th dose independent rect. 5 10
893 404.64 wind 9.0 720 < th dose independent rect. 7 14
974 404.83 wind 9.0 270 < th dose independent rect. 3 21
976 404.89 precipitation 0.1 720 < th dose independent rect. 21 10
977 404.89 precipitation 0.1 720 < th dose dependent rect. 21 10
989 405.19 precipitation 0.1 90 < th dose independent rect. 5 12
990 405.19 precipitation 0.1 90 < th dose dependent rect. 5 12
995 405.32 temperature 30.0 720 < th dose independent rect. 19 14