FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0335600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0445) R2 : 0.546
β1 : 1.04 (0.163) R2dD : 0.0423 R2D : 0.0454
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.84 (0.0823) R2dE : 0.499 R2E : 0.496
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.151 (0.0951) R2dN8 : 0.00339 R2N8 : 0.00446
σ : 0.833
deviance : 320.03
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.5099
memory length : 67
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.92 0.834 4.57 0.983 0.646 -2.28 -1.06 0.506 -0.226 1.74 0.6075 82 -- --
314.79 0.826 4.57 1.01 0.633 -2.28 -0.471 -- -0.209 1.5 0.65 76 -- --
315.12 0.827 4.58 0.996 0.731 -2.36 -- -0.206 -0.208 1.22 0.58 74 -- --
315.28 0.827 4.57 1.02 0.679 -2.32 -- -- -0.202 1.18 0.5786 74 -- --
320.17 0.833 4.56 1.06 -- -1.84 -- -0.165 -0.19 -- 0.649 71 -- --
402.67 0.941 4.49 1.12 2.07 -- 0.345 -- -0.0584 12.1 -- -- -- --
403.18 0.94 4.49 1.13 2.06 -- -- -- -0.0571 12.1 -- -- -- --
320.03 0.833 4.55 1.04 -- -1.84 -- -- -0.151 -- 0.5099 67 -- --
342.36 0.862 4.59 -- 0.743 -2.37 -- -- -0.303 1.02 0.47 71 -- --
671.39 1.21 4.53 1.06 -- -- -- -- -0.087 -- -- -- -- --
436.74 0.978 4.52 -- 2.05 -- -- -- -0.183 12.1 -- -- -- --
348.41 0.869 4.57 -- -- -1.84 -- -- -0.26 -- 0.48 64 -- --
701.18 1.24 4.56 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.29 temperature 10.0 720 > th dose dependent rect. 5 2
3 313.26 radiation 1.0 90 < th dose dependent rect. 15 17
14 315.42 radiation 1.0 90 < th dose dependent rect. 17 15
29 316.23 radiation 1.0 90 < th dose independent rect. 15 17
31 316.26 temperature 20.0 720 > th dose independent rect. 5 2
47 317.52 radiation 1.0 90 < th dose dependent rect. 15 14
54 317.81 radiation 1.0 90 < th dose dependent rect. 6 23
57 317.94 radiation 10.0 720 < th dose independent rect. 5 2
60 317.99 radiation 1.0 90 < th dose independent rect. 17 15
61 318.02 radiation 1.0 90 < th dose dependent no NA NA
66 318.35 radiation 1.0 90 < th dose dependent rect. 17 23
72 318.68 radiation 1.0 90 < th dose independent rect. 6 23
77 318.79 radiation 1.0 90 < th dose independent rect. 15 14
98 320.05 radiation 1.0 90 < th dose dependent rect. 17 12
101 320.08 radiation 1.0 90 < th dose independent rect. 17 23
114 320.55 radiation 1.0 90 < th dose independent no NA NA
115 320.70 radiation 1.0 90 > th dose independent no NA NA
116 320.70 radiation 1.0 90 > th dose independent rect. 4 15
183 321.58 radiation 1.0 90 < th dose independent rect. 17 12
203 322.60 radiation 20.0 90 < th dose independent rect. 5 8
228 324.35 radiation 40.0 90 < th dose independent rect. 5 20
234 325.10 radiation 20.0 90 < th dose independent rect. 5 21
239 325.68 radiation 20.0 90 < th dose independent rect. 5 10
240 325.79 radiation 30.0 90 < th dose independent rect. 5 6
248 326.93 radiation 20.0 90 < th dose independent rect. 5 12
249 327.11 radiation 40.0 90 < th dose dependent rect. 5 8
256 328.02 radiation 40.0 90 < th dose dependent rect. 5 6
257 328.11 radiation 1.0 90 < th dose independent sin 10 NA
258 328.42 radiation 40.0 90 < th dose independent rect. 5 12
261 328.79 radiation 1.0 90 < th dose dependent rect. 22 23
265 329.13 radiation 1.0 90 > th dose independent sin 10 NA
271 329.60 temperature 10.0 90 > th dose dependent rect. 18 11
274 329.71 radiation 40.0 90 < th dose dependent rect. 5 10
281 330.05 radiation 1.0 90 > th dose independent rect. 13 23
283 330.07 radiation 10.0 720 < th dose independent rect. 21 10
284 330.17 humidity 60.0 90 > th dose independent rect. 5 12
285 330.30 radiation 40.0 720 < th dose independent rect. 19 14
286 330.35 wind 7.0 90 < th dose independent rect. 18 11
293 330.76 radiation 40.0 90 < th dose dependent rect. 5 12
301 331.26 radiation 1.0 90 < th dose independent rect. 22 23
303 331.28 radiation 40.0 90 < th dose independent rect. 5 10
311 331.63 humidity 70.0 720 > th dose independent rect. 19 14
314 331.86 radiation 1.0 90 < th dose dependent sin 10 NA
317 332.03 wind 9.0 90 < th dose dependent rect. 18 11
318 332.04 radiation 1.0 90 > th dose independent rect. 16 23
319 332.12 precipitation 0.1 90 < th dose independent rect. 5 13
320 332.12 precipitation 0.1 90 < th dose dependent rect. 5 13
323 332.29 humidity 50.0 90 > th dose dependent rect. 5 12
345 333.23 radiation 30.0 720 < th dose dependent rect. 5 2
494 334.90 precipitation 0.1 90 < th dose independent rect. 18 11
495 334.90 precipitation 0.1 90 < th dose dependent rect. 18 11
497 334.93 humidity 60.0 90 > th dose independent rect. 18 11
501 335.18 temperature 10.0 90 > th dose independent rect. 18 11
503 335.18 atmosphere 995.0 90 > th dose independent rect. 18 11
507 335.18 temperature 10.0 90 > th dose independent rect. 5 13
508 335.18 atmosphere 1015.0 90 < th dose independent rect. 5 13
513 335.40 atmosphere 995.0 90 > th dose independent rect. 5 13
541 336.06 radiation 40.0 10 < th dose dependent rect. 5 21
549 336.19 radiation 40.0 90 < th dose dependent rect. 5 21
575 336.85 humidity 50.0 90 > th dose dependent rect. 5 6
585 337.16 wind 9.0 720 < th dose independent rect. 7 22
605 337.63 atmosphere 1015.0 90 < th dose independent rect. 18 11
613 337.78 humidity 60.0 90 > th dose independent rect. 5 6
620 338.07 wind 9.0 90 < th dose independent rect. 5 13
621 338.10 humidity 50.0 90 > th dose dependent rect. 5 10
662 338.94 radiation 1.0 720 < th dose dependent rect. 23 7
690 339.34 wind 9.0 720 < th dose independent rect. 9 10
693 339.49 humidity 70.0 720 > th dose independent rect. 5 2
696 339.57 radiation 1.0 90 < th dose dependent sin 3 NA
698 339.78 radiation 1.0 30 > th dose independent sin 3 NA
700 339.89 wind 9.0 720 < th dose independent rect. 15 14
705 339.94 wind 9.0 720 < th dose independent rect. 7 14
711 340.10 radiation 40.0 720 < th dose dependent rect. 21 10
724 340.39 temperature 30.0 90 < th dose independent rect. 18 11
739 340.83 wind 9.0 720 < th dose independent rect. 17 2
748 341.19 humidity 70.0 720 > th dose independent rect. 21 10
759 341.44 radiation 1.0 30 < th dose independent sin 3 NA
764 341.58 wind 9.0 720 < th dose independent rect. 17 10
781 341.89 radiation 1.0 90 < th dose dependent rect. 1 18
792 342.16 radiation 20.0 720 < th dose independent rect. 17 2
807 342.32 atmosphere 1010.0 90 < th dose independent rect. 5 6
815 342.48 temperature 10.0 720 > th dose independent rect. 5 10
816 342.48 atmosphere 1015.0 720 < th dose independent rect. 5 10
817 342.48 temperature 10.0 720 > th dose independent rect. 15 14
821 342.52 wind 7.0 720 < th dose independent rect. 5 2
823 342.52 temperature 10.0 720 > th dose independent rect. 5 2
824 342.52 temperature 30.0 720 < th dose independent rect. 5 2
825 342.52 humidity 50.0 720 > th dose independent rect. 5 2
827 342.52 atmosphere 995.0 720 > th dose independent rect. 5 2
828 342.52 atmosphere 1015.0 720 < th dose independent rect. 5 2
830 342.52 temperature 10.0 720 > th dose independent rect. 7 22
831 342.55 precipitation 0.1 720 < th dose independent rect. 5 2
832 342.55 precipitation 0.1 720 < th dose dependent rect. 5 2
839 342.66 wind 9.0 720 < th dose independent rect. 7 6
849 342.80 wind 9.0 720 < th dose independent rect. 1 18
854 342.86 temperature 15.0 720 > th dose independent rect. 17 2
855 342.87 radiation 1.0 90 > th dose independent rect. 11 23
857 342.89 radiation 20.0 720 < th dose independent rect. 17 10
859 342.91 atmosphere 1015.0 720 < th dose independent rect. 17 2
862 342.91 temperature 10.0 720 > th dose independent rect. 19 22
868 343.08 temperature 15.0 90 > th dose dependent rect. 1 4
877 343.26 atmosphere 995.0 720 > th dose independent rect. 5 10
887 343.39 atmosphere 1015.0 720 < th dose independent rect. 7 14
894 343.50 temperature 10.0 720 > th dose independent rect. 17 10
897 343.50 temperature 10.0 720 > th dose independent rect. 3 14
902 343.59 wind 9.0 270 < th dose independent rect. 24 13
917 343.75 temperature 10.0 720 > th dose independent rect. 9 10
918 343.75 atmosphere 1015.0 720 < th dose independent rect. 9 10
919 343.75 temperature 10.0 720 > th dose independent rect. 19 14
921 343.75 atmosphere 995.0 720 > th dose independent rect. 19 14
936 343.95 humidity 50.0 90 > th dose dependent rect. 17 12
944 344.08 atmosphere 1015.0 270 < th dose independent rect. 24 13
947 344.09 radiation 1.0 90 < th dose dependent rect. 1 16
948 344.11 temperature 10.0 720 > th dose independent rect. 21 10
949 344.11 temperature 30.0 720 < th dose independent rect. 21 10
950 344.11 humidity 50.0 720 > th dose independent rect. 21 10
952 344.11 atmosphere 995.0 720 > th dose independent rect. 21 10
955 344.11 temperature 10.0 720 > th dose independent rect. 7 14
957 344.14 temperature 10.0 270 > th dose independent rect. 13 11
958 344.14 temperature 10.0 270 > th dose independent rect. 24 13
959 344.14 atmosphere 995.0 270 > th dose independent rect. 24 13
960 344.14 wind 9.0 720 < th dose independent rect. 19 14
967 344.23 radiation 1.0 90 < th dose dependent rect. 1 7
974 344.34 radiation 1.0 90 < th dose dependent rect. 1 10
977 344.37 wind 9.0 720 < th dose independent rect. 21 10
981 344.45 humidity 70.0 90 > th dose independent rect. 5 4
983 344.47 radiation 1.0 90 < th dose independent rect. 1 16
993 344.57 radiation 40.0 720 < th dose independent rect. 15 14
996 344.59 radiation 1.0 90 < th dose independent rect. 1 7