BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0331900 Os01g0331900|AK121761
(183 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0331900 Protein of unknown function DUF846, eukaryotic... 329 8e-91
Os05g0159100 Protein of unknown function DUF846, eukaryotic... 271 3e-73
AK060262 107 4e-24
>Os01g0331900 Protein of unknown function DUF846, eukaryotic family protein
Length = 183
Score = 329 bits (843), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 164/183 (89%), Positives = 164/183 (89%)
Query: 1 MDQHQVVGENYANPKTCFFHVLFKAGALAFYILSAXXXXXXXXXXXXXXXXXXXDFWVVK 60
MDQHQVVGENYANPKTCFFHVLFKAGALAFYILSA DFWVVK
Sbjct: 1 MDQHQVVGENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVK 60
Query: 61 NVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLG 120
NVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLG
Sbjct: 61 NVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLG 120
Query: 121 IFSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWTRTTLLSSGVRSTIQSA 180
IFSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWTRTTLLSSGVRSTIQSA
Sbjct: 121 IFSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWTRTTLLSSGVRSTIQSA 180
Query: 181 FGV 183
FGV
Sbjct: 181 FGV 183
>Os05g0159100 Protein of unknown function DUF846, eukaryotic family protein
Length = 187
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/186 (72%), Positives = 148/186 (79%), Gaps = 3/186 (1%)
Query: 1 MDQHQVVGENYANPKTCFFHVLFKAGALAFYILSAXXXXXXXXXXXXXXXXXXXDFWVVK 60
MD+ QVV ENYANP TC FHVLFKAGAL FYIL + DFWVVK
Sbjct: 1 MDRPQVVTENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVK 60
Query: 61 NVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLG 120
NVSGRILVG+RWWNEIDDEGNSVWKFECLDGE+LARMNKKDSWLFWWTLYLTAAAWI+LG
Sbjct: 61 NVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILG 120
Query: 121 IFSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWTR---TTLLSSGVRSTI 177
IFSLIRL ADYLLVVGVCL+LS+ANIVGFT+CNKDAKKN+ + ++S + ST+
Sbjct: 121 IFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQNAITSRITSTL 180
Query: 178 QSAFGV 183
QSAFGV
Sbjct: 181 QSAFGV 186
>AK060262
Length = 78
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 64/77 (83%), Gaps = 3/77 (3%)
Query: 110 YLTAAAWIVLGIFSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWTR---T 166
YLTAAAWI+LGIFSLIRL ADYLLVVGVCL+LS+ANIVGFT+CNKDAKKN+ +
Sbjct: 1 YLTAAAWIILGIFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQ 60
Query: 167 TLLSSGVRSTIQSAFGV 183
++S + ST+QSAFGV
Sbjct: 61 NAITSRITSTLQSAFGV 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,538,518
Number of extensions: 187693
Number of successful extensions: 499
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 3
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)