BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0290100 Os01g0290100|AK069735
         (482 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0290100  Aminotransferase, class V family protein            912   0.0  
Os01g0290600  Aminotransferase, class V family protein            691   0.0  

>Os01g0290100 Aminotransferase, class V family protein
          Length = 482

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/442 (100%), Positives = 442/442 (100%)

Query: 41  KRPRSVISAAQIRAEFEHHEAGVARVNNGSFGCCPSSLLDAQARWQRLFIAQPDDFYFHA 100
           KRPRSVISAAQIRAEFEHHEAGVARVNNGSFGCCPSSLLDAQARWQRLFIAQPDDFYFHA
Sbjct: 41  KRPRSVISAAQIRAEFEHHEAGVARVNNGSFGCCPSSLLDAQARWQRLFIAQPDDFYFHA 100

Query: 101 LQPGLRRSRAAVAGLVNAGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDAVLMLH 160
           LQPGLRRSRAAVAGLVNAGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDAVLMLH
Sbjct: 101 LQPGLRRSRAAVAGLVNAGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDAVLMLH 160

Query: 161 YAYGAVKKSIHAYVARAGATVVEVPLPFPVASADAIIAEFRAALDVAKAGGRKVRLAVID 220
           YAYGAVKKSIHAYVARAGATVVEVPLPFPVASADAIIAEFRAALDVAKAGGRKVRLAVID
Sbjct: 161 YAYGAVKKSIHAYVARAGATVVEVPLPFPVASADAIIAEFRAALDVAKAGGRKVRLAVID 220

Query: 221 HITSMPSVVIPVKELVAICREEGVDKVFIDAAHSIGQVPVDVRDIGADFYTSNLHKWFFC 280
           HITSMPSVVIPVKELVAICREEGVDKVFIDAAHSIGQVPVDVRDIGADFYTSNLHKWFFC
Sbjct: 221 HITSMPSVVIPVKELVAICREEGVDKVFIDAAHSIGQVPVDVRDIGADFYTSNLHKWFFC 280

Query: 281 PPAVAFLHTRKDDPIASQLHHPVVSHEYGNGLPMESGWIGTRDYSAQLVVPESIDFVNRF 340
           PPAVAFLHTRKDDPIASQLHHPVVSHEYGNGLPMESGWIGTRDYSAQLVVPESIDFVNRF
Sbjct: 281 PPAVAFLHTRKDDPIASQLHHPVVSHEYGNGLPMESGWIGTRDYSAQLVVPESIDFVNRF 340

Query: 341 EGGIEGIRSRNHEKVIEMGKMLAEAWGTFLGTPPELCGSMVMVGLPGCLGVESDDDVMRM 400
           EGGIEGIRSRNHEKVIEMGKMLAEAWGTFLGTPPELCGSMVMVGLPGCLGVESDDDVMRM
Sbjct: 341 EGGIEGIRSRNHEKVIEMGKMLAEAWGTFLGTPPELCGSMVMVGLPGCLGVESDDDVMRM 400

Query: 401 RTMLRKDFMVEVPIYYNSRRVEAQEMAKDKNGDAVTGYVRISHQVYNVTEDYEKLRDAVN 460
           RTMLRKDFMVEVPIYYNSRRVEAQEMAKDKNGDAVTGYVRISHQVYNVTEDYEKLRDAVN
Sbjct: 401 RTMLRKDFMVEVPIYYNSRRVEAQEMAKDKNGDAVTGYVRISHQVYNVTEDYEKLRDAVN 460

Query: 461 KLVADGFTSSKLRPSQKQETMA 482
           KLVADGFTSSKLRPSQKQETMA
Sbjct: 461 KLVADGFTSSKLRPSQKQETMA 482



>Os01g0290600 Aminotransferase, class V family protein
          Length = 479

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/451 (75%), Positives = 389/451 (86%), Gaps = 9/451 (1%)

Query: 41  KRPRSV-----ISAAQIRAEFEHHEAGVARVNNGSFGCCPSSLLDAQARWQRLFIAQPDD 95
           KRPR+      I+ A++RAEF HH+  VAR+NNG+FGCCP+S+L A+ARWQRLF++QPD 
Sbjct: 29  KRPRAGAGAAAITDAEVRAEFAHHDRAVARLNNGTFGCCPASVLAARARWQRLFLSQPDA 88

Query: 96  FYFHALQPGLRRSRAAVAGLVNAGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDA 155
           FYFH LQPGL RSRAAVA  V AGD +EVSLVDN TTAAAI++QH AWSFAEG F+RGD 
Sbjct: 89  FYFHHLQPGLARSRAAVAAAVGAGDASEVSLVDNVTTAAAIIMQHVAWSFAEGDFARGDV 148

Query: 156 VLMLHYAYGAVKKSIHAYVARAGATVVEVPLPFPVASADAIIAEFRAALDVAKAGGRK-V 214
           VLM  Y Y ++K SIHAYVARAGATVVEVPLPFPV+S DAI+AEFRAAL VA+ GGR+ V
Sbjct: 149 VLMFLYTYCSIKNSIHAYVARAGATVVEVPLPFPVSSPDAIVAEFRAALAVARDGGRRRV 208

Query: 215 RLAVIDHITSMPSVVIPVKELVAICREEGVDKVFIDAAHSIGQVPVDVRDIGADFYTSNL 274
           RLAVIDHIT+MP+V+IPVKELVAICREEGVDKVF+DAAH++GQVPVDVRDIGADFY SNL
Sbjct: 209 RLAVIDHITAMPTVLIPVKELVAICREEGVDKVFVDAAHAVGQVPVDVRDIGADFYASNL 268

Query: 275 HKWFFCPPAVAFLHTRKDDPIASQLHHPVVSHEYGNGLPMESGWIGTRDYSAQLVVPESI 334
           HKWFFCP AVAF+HTRKDDP++S+LHHPVVS EYGNGLPMES WIG RDYSAQLVVP+ +
Sbjct: 269 HKWFFCPSAVAFIHTRKDDPVSSKLHHPVVSSEYGNGLPMESAWIGVRDYSAQLVVPDVV 328

Query: 335 DFVNRFEGGIEGIRSRNHEKVIEMGKMLAEAWGTFLGTPPELCGSMVMVGLPGCLGVESD 394
           DFVNRF+GG+EGIR RNH+KV+EMG MLA AWGTFLGTPPE+CGSM+MVGLPG LGV S+
Sbjct: 329 DFVNRFDGGVEGIRRRNHDKVVEMGTMLAAAWGTFLGTPPEMCGSMLMVGLPGSLGVGSE 388

Query: 395 DDVMRMRTMLRKDFMVEVPIYYNSRRVEAQ---EMAKDKNGDAVTGYVRISHQVYNVTED 451
           DD + +RTMLRK F VEVP+YYNS+   A    EM KD NGD VTGYVRISHQVYNV E+
Sbjct: 389 DDAVGLRTMLRKQFKVEVPLYYNSKAAAADAPPEMVKDGNGDPVTGYVRISHQVYNVREE 448

Query: 452 YEKLRDAVNKLVADGFTSSKLRPSQKQETMA 482
           YE LRDAV KLVADGFT  KLRP +K+ET+A
Sbjct: 449 YEALRDAVAKLVADGFTCRKLRPPEKEETLA 479



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,389,627
Number of extensions: 653342
Number of successful extensions: 1658
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1657
Number of HSP's successfully gapped: 2
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)