Os01g0290100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase, class V family protein.
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Os01g0290100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminotransferase, class V family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.32 | 0.25 | 11.7 | 0.766 | 0.204 | 0.279 | 0.332 | 0.89 | -0.0238 | 7.3 | 56.24 | 6234 | -- | -- |
| 29.02 | 0.251 | 11.7 | 0.846 | 0.186 | 0.208 | 0.23 | -- | -0.00359 | 7.04 | 51.5 | 15426 | -- | -- |
| 28.48 | 0.249 | 11.7 | 0.773 | 0.214 | 0.282 | -- | 0.861 | -0.0258 | 6.45 | 56.49 | 6233 | -- | -- |
| 28.91 | 0.25 | 11.7 | 0.887 | 0.206 | 0.23 | -- | -- | -0.0289 | 6.49 | 51.99 | 15352 | -- | -- |
| 30.68 | 0.258 | 11.7 | 0.799 | -- | 0.341 | -- | 0.927 | -0.024 | -- | 56.5 | 6910 | -- | -- |
| 30.93 | 0.261 | 11.7 | 0.819 | 0.201 | -- | 0.262 | -- | -0.056 | 7 | -- | -- | -- | -- |
| 31.01 | 0.261 | 11.7 | 0.822 | 0.207 | -- | -- | -- | -0.0574 | 6.28 | -- | -- | -- | -- |
| 31.01 | 0.259 | 11.7 | 0.98 | -- | 0.454 | -- | -- | 0.0186 | -- | 53 | 21230 | -- | -- |
| 43.55 | 0.307 | 11.8 | -- | 0.224 | -0.409 | -- | -- | -0.197 | 6.13 | 47 | 47353 | -- | -- |
| 33.25 | 0.269 | 11.7 | 0.828 | -- | -- | -- | -- | -0.0529 | -- | -- | -- | -- | -- |
| 48.83 | 0.327 | 11.7 | -- | 0.219 | -- | -- | -- | -0.149 | 6.08 | -- | -- | -- | -- |
| 39.73 | 0.294 | 11.8 | -- | -- | -0.688 | -- | -- | -0.174 | -- | 64.78 | 47170 | -- | -- |
| 51.32 | 0.334 | 11.8 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.30 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 2 | 27.34 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 4 | 27.43 | wind | 1 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 5 | 27.44 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 7 | 27.44 | wind | 7 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 11 | 27.45 | wind | 1 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 12 | 27.46 | wind | 5 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 14 | 27.47 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 15 | 27.47 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 17 | 27.47 | wind | 7 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 55 | 27.51 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 60 | 27.52 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 68 | 27.53 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 73 | 27.54 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 74 | 27.54 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 96 | 27.56 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 97 | 27.56 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 115 | 27.57 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 124 | 27.58 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 134 | 27.59 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 145 | 27.60 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 146 | 27.60 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 148 | 27.60 | wind | 1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 156 | 27.61 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 205 | 27.64 | wind | 7 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 223 | 27.65 | wind | 1 | 14400 | > th | dose dependent | sin | 8 | NA |
| 224 | 27.65 | wind | 9 | 14400 | < th | dose dependent | sin | 7 | NA |
| 231 | 27.66 | wind | 3 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 239 | 27.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 259 | 27.67 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 293 | 27.69 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 331 | 27.71 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 391 | 27.74 | wind | 3 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 392 | 27.74 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 394 | 27.74 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 409 | 27.75 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 453 | 27.77 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 471 | 27.78 | radiation | 10 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 477 | 27.79 | wind | 3 | 14400 | < th | dose independent | sin | 8 | NA |
| 496 | 27.80 | wind | 3 | 14400 | > th | dose independent | sin | 8 | NA |
| 554 | 27.83 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 574 | 27.84 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 583 | 27.84 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 23 |
| 607 | 27.86 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 631 | 27.87 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 655 | 27.88 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 663 | 27.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 724 | 27.91 | wind | 1 | 720 | > th | dose independent | rect. | 9 | 16 |
| 803 | 27.95 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 809 | 27.95 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 811 | 27.95 | humidity | 90 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 850 | 27.97 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 853 | 27.97 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 999 | 28.01 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 4 |