BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0290100 Os01g0290100|AK069735
(482 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26600.2 | chr5:9377455-9378882 FORWARD LENGTH=476 561 e-160
AT3G62130.1 | chr3:23004994-23006358 FORWARD LENGTH=455 556 e-159
AT1G08490.1 | chr1:2685980-2688547 REVERSE LENGTH=464 59 8e-09
>AT5G26600.2 | chr5:9377455-9378882 FORWARD LENGTH=476
Length = 475
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/416 (63%), Positives = 320/416 (76%), Gaps = 9/416 (2%)
Query: 58 HHEAGVARVNNGSFGCCPSSLLDAQARWQRLFIAQPDDFYFHALQPGLRRSRAAVAGLVN 117
HH+ AR+NNGSFGCCPSS+L Q WQ F+ QPD FYF L+P + SR+ + L+N
Sbjct: 66 HHDPDFARINNGSFGCCPSSILALQRDWQLRFLRQPDRFYFDELKPKISDSRSVIKRLIN 125
Query: 118 AGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDAVLMLHYAYGAVKKSIHAYVARA 177
A EVS+VDNATTAAAIVLQ AW+F EGRF +GDAV+MLHYAYG+VKKS+ AYV R+
Sbjct: 126 AEHDDEVSIVDNATTAAAIVLQQTAWAFREGRFDKGDAVVMLHYAYGSVKKSVEAYVTRS 185
Query: 178 GATVVEVPLPFPVASADAIIAEFRAALDVAKAGGRKVRLAVIDHITSMPSVVIPVKELVA 237
G V EV LPFPV SAD II FR L+ KA GR+VRLA+IDH+TSMPSVVIP+KELV
Sbjct: 186 GGHVTEVQLPFPVISADEIIDRFRIGLESGKANGRRVRLALIDHVTSMPSVVIPIKELVK 245
Query: 238 ICREEGVDKVFIDAAHSIGQVPVDVRDIGADFYTSNLHKWFFCPPAVAFLHTRK-DDPIA 296
ICR EGVD+VF+DAAH IG V VD+++IGADFYTSNLHKWFF PP+VAFL+ RK +
Sbjct: 246 ICRREGVDQVFVDAAHGIGCVDVDMKEIGADFYTSNLHKWFFAPPSVAFLYCRKSSNGGV 305
Query: 297 SQLHHPVVSHEYGNGLPMESGWIGTRDYSAQLVVPESIDFVNRFEGGIEGIRSRNHEKVI 356
+ LHHPVVS+EYGNGL +ES W+GTRDYSAQLVVP ++FVNRFEGGI+GI+ RNHE V+
Sbjct: 306 ADLHHPVVSNEYGNGLAVESSWVGTRDYSAQLVVPSILEFVNRFEGGIDGIKKRNHESVV 365
Query: 357 EMGKMLAEAWGTFLGTPPELCGSMVMVGLPGCLGVESDDDVMRMRTMLRKDFMVEVPIYY 416
EMG+ML ++WGT LG PPE+C SM+MVGLP CLGV S+ DV+++RT LR+ F +E+PIY+
Sbjct: 366 EMGQMLVKSWGTQLGCPPEMCASMIMVGLPVCLGVSSESDVLKLRTFLREKFRIEIPIYF 425
Query: 417 NSRRVEAQEMAKDKNGDAVTGYVRISHQVYNVTEDYEKLRDAVNKLVADGFTSSKL 472
D D +TGYVRIS QVYN EDY +LRDA+N LV DGF + L
Sbjct: 426 RP--------PGDGEIDPITGYVRISFQVYNKPEDYHRLRDAINGLVRDGFKCTSL 473
>AT3G62130.1 | chr3:23004994-23006358 FORWARD LENGTH=455
Length = 454
Score = 556 bits (1433), Expect = e-159, Method: Compositional matrix adjust.
Identities = 257/434 (59%), Positives = 334/434 (76%), Gaps = 4/434 (0%)
Query: 41 KRPR--SVISAAQIRAEFEHHEAGVARVNNGSFGCCPSSLLDAQARWQRLFIAQPDDFYF 98
K+PR +++ + I +EF HH+ GVAR+NNGSFGCCP S+L+AQ WQ ++ QPD+FYF
Sbjct: 20 KKPRLAGLLTESDIDSEFAHHQTGVARINNGSFGCCPGSVLEAQREWQLRYLRQPDEFYF 79
Query: 99 HALQPGLRRSRAAVAGLVNAGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDAVLM 158
+ L+ GL SR ++ L+NA DV EVSLVDNATTAAAIVLQ F+EG++ + D V+M
Sbjct: 80 NGLRRGLLASRTVISDLINADDVDEVSLVDNATTAAAIVLQKVGRCFSEGKYKKEDTVVM 139
Query: 159 LHYAYGAVKKSIHAYVARAGATVVEVPLPFPVASADAIIAEFRAALDVAKAGGRKVRLAV 218
H A+ +VKKSI AYV+R G + VEV LPFPV S + II++FR L+ +A GR VRLA+
Sbjct: 140 FHCAFQSVKKSIQAYVSRVGGSTVEVRLPFPVNSNEEIISKFREGLEKGRANGRTVRLAI 199
Query: 219 IDHITSMPSVVIPVKELVAICREEGVDKVFIDAAHSIGQVPVDVRDIGADFYTSNLHKWF 278
IDHITSMP V++PV+ELV ICREEGV++VF+DAAH+IG V VDV++IGAD+Y SNLHKWF
Sbjct: 200 IDHITSMPCVLMPVRELVKICREEGVEQVFVDAAHAIGSVKVDVKEIGADYYVSNLHKWF 259
Query: 279 FCPPAVAFLHTRKDDPIASQLHHPVVSHEYGNGLPMESGWIGTRDYSAQLVVPESIDFVN 338
FCPP++AF + +K S +HHPVVSHE+GNGLP+ES WIGTRDYS+QLVVP ++FVN
Sbjct: 260 FCPPSIAFFYCKKRGS-ESDVHHPVVSHEFGNGLPIESAWIGTRDYSSQLVVPSVMEFVN 318
Query: 339 RFEGGIEGIRSRNHEKVIEMGKMLAEAWGTFLGTPPELCGSMVMVGLPGCLGVESDDDVM 398
RFEGG+EGI +NH++ + MG MLA+AWGT LG+PPE+C MVM+GLP L V SD+D +
Sbjct: 319 RFEGGMEGIMMKNHDEAVRMGLMLADAWGTNLGSPPEMCVGMVMIGLPSKLCVGSDEDAI 378
Query: 399 RMRTMLRKDFMVEVPIYYNSRRVEAQEMAKDKNGDAVTGYVRISHQVYNVTEDYEKLRDA 458
++R+ LR + VEVP++Y R + +E KDK+ +T YVRISHQVYN TEDYE+LRDA
Sbjct: 379 KLRSYLRVHYSVEVPVFYLGLR-DGEEGVKDKDSGLITAYVRISHQVYNKTEDYERLRDA 437
Query: 459 VNKLVADGFTSSKL 472
+ +LV D T L
Sbjct: 438 ITELVKDQMTCQNL 451
>AT1G08490.1 | chr1:2685980-2688547 REVERSE LENGTH=464
Length = 463
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 108 SRAAVAGLVNAGDVAEVSLVDNATTAAAIVLQHAAWSFAEGRFSRGDAVLMLHYAYGAVK 167
+R VA +NA D E+ NAT A +V A+S+ GD V++ + +
Sbjct: 121 ARKKVARFINASDSREIVFTRNATEAINLV----AYSWGLSNLKPGDEVILTVAEHHSCI 176
Query: 168 KSIHAYVARAGATVVEVPLPFPVASADAI--IAEFRAALDVAKAGGRKVRLAVIDHITSM 225
+ GA L F + D + I + R + K +L + H++++
Sbjct: 177 VPWQIVSQKTGAV-----LKFVTLNEDEVPDINKLRELI------SPKTKLVAVHHVSNV 225
Query: 226 PSVVIPVKELVAICREEGVDKVFIDAAHSIGQVPVDVRDIGADFYTSNLHKWFFC-PPAV 284
+ +P++E+V + G KV +DA S+ + VDV+ + ADF ++ HK C P +
Sbjct: 226 LASSLPIEEIVVWAHDVGA-KVLVDACQSVPHMVVDVQKLNADFLVASSHK--MCGPTGI 282
Query: 285 AFLHTRKD 292
FL+ + D
Sbjct: 283 GFLYGKSD 290
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,435,381
Number of extensions: 389057
Number of successful extensions: 826
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 3
Length of query: 482
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 380
Effective length of database: 8,310,137
Effective search space: 3157852060
Effective search space used: 3157852060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)