Os01g0290600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase, class V family protein.
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Os01g0290600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminotransferase, class V family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.06 | 0.5 | 8.74 | 3.08 | 0.336 | 0.946 | 1.35 | -0.872 | 0.536 | 20.7 | 0.02004 | 6368 | -- | -- |
| 113.32 | 0.496 | 8.75 | 3 | 0.32 | 1.18 | 1.53 | -- | 0.532 | 20.1 | 0.005498 | 6305 | -- | -- |
| 118.09 | 0.506 | 8.75 | 3.12 | 0.43 | 0.87 | -- | -1.44 | 0.537 | 21 | 0.04231 | 6556 | -- | -- |
| 120.17 | 0.511 | 8.75 | 2.96 | 0.331 | 1.19 | -- | -- | 0.526 | 19.7 | 0.01 | 6305 | -- | -- |
| 122.43 | 0.515 | 8.72 | 3.08 | -- | 0.911 | -- | -1.1 | 0.555 | -- | 0.01969 | 7571 | -- | -- |
| 132.01 | 0.539 | 8.79 | 2.63 | 0.266 | -- | 1.13 | -- | 0.374 | 22.1 | -- | -- | -- | -- |
| 135.78 | 0.546 | 8.79 | 2.58 | 0.292 | -- | -- | -- | 0.367 | 0.198 | -- | -- | -- | -- |
| 122.09 | 0.515 | 8.75 | 3.01 | -- | 1.12 | -- | -- | 0.53 | -- | 0.004145 | 10435 | -- | -- |
| 300.36 | 0.807 | 8.81 | -- | 0.222 | 1.03 | -- | -- | 0.292 | 19.5 | 10 | 6239 | -- | -- |
| 141.16 | 0.555 | 8.79 | 2.59 | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
| 311.08 | 0.825 | 8.86 | -- | 0.33 | -- | -- | -- | 0.0798 | 0.623 | -- | -- | -- | -- |
| 300.89 | 0.808 | 8.82 | -- | -- | 0.703 | -- | -- | 0.23 | -- | 75.15 | 30460 | -- | -- |
| 317.9 | 0.832 | 8.85 | -- | -- | -- | -- | -- | 0.0843 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.03 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 3 | 114.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 5 | 114.35 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 14 | 114.61 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 20 | 114.68 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 22 | 114.69 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 23 | 114.69 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 30 | 114.71 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 31 | 114.72 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 0 | NA |
| 33 | 114.72 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 35 | 114.72 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 37 | 114.72 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 50 | 114.72 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 51 | 114.72 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 52 | 114.72 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 53 | 114.72 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 54 | 114.72 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 58 | 114.73 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 0 | NA |
| 59 | 114.73 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 62 | 114.73 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 1 | NA |
| 63 | 114.73 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 64 | 114.73 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 65 | 114.73 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 75 | 114.74 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 78 | 114.74 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 8 | 5 |
| 104 | 114.76 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 114 | 114.77 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 156 | 114.80 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 19 | 19 |
| 158 | 114.80 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 169 | 114.81 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 211 | 114.82 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 16 | 17 |
| 253 | 114.85 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 262 | 114.85 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 11 | NA |
| 286 | 114.87 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 309 | 114.88 | atmosphere | 1015 | 14400 | > th | dose dependent | no | NA | NA |
| 323 | 114.89 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 10 | 18 |
| 458 | 114.94 | radiation | 30 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 486 | 114.96 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 13 | 13 |
| 496 | 114.96 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 559 | 115.00 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 16 | NA |
| 561 | 115.00 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 16 | NA |
| 716 | 115.07 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 717 | 115.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 766 | 115.10 | atmosphere | 1015 | 14400 | > th | dose independent | no | NA | NA |
| 780 | 115.10 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 784 | 115.11 | atmosphere | 1015 | 14400 | < th | dose independent | no | NA | NA |
| 826 | 115.13 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 883 | 115.16 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 887 | 115.17 | wind | 3 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 948 | 115.21 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 966 | 115.22 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 981 | 115.23 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 16 |