BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0283100 Os01g0283100|AK071713
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0283100 Similar to Ferripyochelin-binding protein-like 549 e-157
Os12g0169700 Similar to Ferripyochelin-binding protein-like 396 e-111
Os07g0642900 Trimeric LpxA-like domain containing protein 386 e-107
Os02g0508000 Trimeric LpxA-like domain containing protein 88 7e-18
>Os01g0283100 Similar to Ferripyochelin-binding protein-like
Length = 263
Score = 549 bits (1415), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MAGLGKAFYAVGFWIRETGQALDRLGCRLQGNYYFHEQLSRHRTLMNIFDKTPHVHRDAF 60
MAGLGKAFYAVGFWIRETGQALDRLGCRLQGNYYFHEQLSRHRTLMNIFDKTPHVHRDAF
Sbjct: 1 MAGLGKAFYAVGFWIRETGQALDRLGCRLQGNYYFHEQLSRHRTLMNIFDKTPHVHRDAF 60
Query: 61 VAPSASLIGDIQVGQGASIWYGCVLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKVFPT 120
VAPSASLIGDIQVGQGASIWYGCVLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKVFPT
Sbjct: 61 VAPSASLIGDIQVGQGASIWYGCVLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKVFPT 120
Query: 121 IIGDNVTVGHSAVLQGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTRIPCGEV 180
IIGDNVTVGHSAVLQGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTRIPCGEV
Sbjct: 121 IIGDNVTVGHSAVLQGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTRIPCGEV 180
Query: 181 WGGNPAKFLRKLTDDEITFIKESASNYSTLAKAHAAENAKPVEKTEFEKLFRKKSAHQDE 240
WGGNPAKFLRKLTDDEITFIKESASNYSTLAKAHAAENAKPVEKTEFEKLFRKKSAHQDE
Sbjct: 181 WGGNPAKFLRKLTDDEITFIKESASNYSTLAKAHAAENAKPVEKTEFEKLFRKKSAHQDE 240
Query: 241 EHDSMIGATREVTPELTPSSSAQ 263
EHDSMIGATREVTPELTPSSSAQ
Sbjct: 241 EHDSMIGATREVTPELTPSSSAQ 263
>Os12g0169700 Similar to Ferripyochelin-binding protein-like
Length = 273
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 180/256 (70%), Positives = 215/256 (83%)
Query: 1 MAGLGKAFYAVGFWIRETGQALDRLGCRLQGNYYFHEQLSRHRTLMNIFDKTPHVHRDAF 60
M LG+A Y VG WIR TGQA+DRLG +QG EQLSRHRT+MNIF+K P VH+D F
Sbjct: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
Query: 61 VAPSASLIGDIQVGQGASIWYGCVLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKVFPT 120
VAPSA++IGD+++G G+SIWYG +LRGD N++ IGSG+NIQDNSLVHVAK+N+SGKV PT
Sbjct: 61 VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT 120
Query: 121 IIGDNVTVGHSAVLQGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTRIPCGEV 180
IIG+NVT+GHSAVL CTVEDEAFVGMGATLLDGVVVEKH MV AG+LV+QNTRIP GEV
Sbjct: 121 IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
Query: 181 WGGNPAKFLRKLTDDEITFIKESASNYSTLAKAHAAENAKPVEKTEFEKLFRKKSAHQDE 240
W GNPAKFLRKLT++EI FI +SA+NY LA+ HAAEN+K ++ E EK+ RKK AH+DE
Sbjct: 181 WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE 240
Query: 241 EHDSMIGATREVTPEL 256
E+DSM+G RE+ PEL
Sbjct: 241 EYDSMLGVVREIPPEL 256
>Os07g0642900 Trimeric LpxA-like domain containing protein
Length = 273
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 175/256 (68%), Positives = 211/256 (82%)
Query: 1 MAGLGKAFYAVGFWIRETGQALDRLGCRLQGNYYFHEQLSRHRTLMNIFDKTPHVHRDAF 60
M LG+A Y G WIR TGQA+DRLG +QG EQL RHRT+MNIF+K P +H+D F
Sbjct: 1 MGTLGRAIYTAGKWIRGTGQAMDRLGSTIQGGLRVDEQLPRHRTIMNIFEKEPRIHKDVF 60
Query: 61 VAPSASLIGDIQVGQGASIWYGCVLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKVFPT 120
VAPSA++IGDI++G G+SIWYG +LRGD N++ IG GTNIQDNSLVHV+K+N+SGKV PT
Sbjct: 61 VAPSAAVIGDIEIGHGSSIWYGSILRGDVNSIHIGVGTNIQDNSLVHVSKANISGKVLPT 120
Query: 121 IIGDNVTVGHSAVLQGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTRIPCGEV 180
IIG++VT+GHSAVL C VEDEAFVGMGATLLDGVVVEKH MV AG+LV+QNTRIP GEV
Sbjct: 121 IIGNSVTIGHSAVLHACIVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
Query: 181 WGGNPAKFLRKLTDDEITFIKESASNYSTLAKAHAAENAKPVEKTEFEKLFRKKSAHQDE 240
W GNPAKFLRKLT++E+ FI +SA+NY LA+ HAAENAK ++ E EK+ RKK AH+DE
Sbjct: 181 WVGNPAKFLRKLTEEEMAFIAQSATNYINLAQVHAAENAKTFDEIELEKMLRKKFAHKDE 240
Query: 241 EHDSMIGATREVTPEL 256
E+DSM+G RE+ PEL
Sbjct: 241 EYDSMLGVVREIPPEL 256
>Os02g0508000 Trimeric LpxA-like domain containing protein
Length = 154
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 65/98 (66%)
Query: 120 TIIGDNVTVGHSAVLQGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTRIPCGE 179
T++ VTVG +L+ CT+E E +G + L++G +VE + ++ AG+++ RIP GE
Sbjct: 35 TLVDRYVTVGAYCLLRSCTIEPECIIGQHSILMEGSLVETNSILEAGSVLPPGRRIPTGE 94
Query: 180 VWGGNPAKFLRKLTDDEITFIKESASNYSTLAKAHAAE 217
+W GNPA+F+RKLT++EI I + A + L ++H +E
Sbjct: 95 LWAGNPARFVRKLTNEEIMEIPKLAVAINDLMQSHFSE 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,099,193
Number of extensions: 373528
Number of successful extensions: 860
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 4
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)