BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0281400 Os01g0281400|J090014O11
         (182 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0281400  Protein of unknown function DUF1606 domain con...   379   e-106
Os11g0174000  Adaptin, N-terminal domain containing protein       347   2e-96

>Os01g0281400 Protein of unknown function DUF1606 domain containing protein
          Length = 182

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 1   GMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL 60
           GMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL
Sbjct: 1   GMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL 60

Query: 61  DVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG 120
           DVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG
Sbjct: 61  DVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG 120

Query: 121 NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVHTYSCFDIL 180
           NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVHTYSCFDIL
Sbjct: 121 NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVHTYSCFDIL 180

Query: 181 LE 182
           LE
Sbjct: 181 LE 182



>Os11g0174000 Adaptin, N-terminal domain containing protein
          Length = 953

 Score =  347 bits (891), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 166/171 (97%), Positives = 167/171 (97%)

Query: 1   GMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL 60
           GMSQLELED VQDDLKAATG FTKDA DANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL
Sbjct: 687 GMSQLELEDAVQDDLKAATGEFTKDADDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL 746

Query: 61  DVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG 120
           DVT+INRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG
Sbjct: 747 DVTVINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG 806

Query: 121 NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKV 171
           NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADV FRNMWAEFEWENKV
Sbjct: 807 NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVAFRNMWAEFEWENKV 857



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,557,240
Number of extensions: 196686
Number of successful extensions: 412
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)