BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0273300 Os01g0273300|Os01g0273300
         (537 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0273300  BSD domain containing protein                       524   e-149
Os07g0647400  BSD domain containing protein                       122   9e-28

>Os01g0273300 BSD domain containing protein
          Length = 537

 Score =  524 bits (1350), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 311/537 (57%), Positives = 311/537 (57%)

Query: 1   MNFFSSVLSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKTLAEEIDVR 60
           MNFFSSVLSAA                                     LIKTLAEEIDVR
Sbjct: 1   MNFFSSVLSAAGVGGDEHEEERGEGEEAAAEQGEEGEAESGGGWSFGGLIKTLAEEIDVR 60

Query: 61  PRDXXXXXXXXXXXXXXXXXXXXXXXXXXXWIFGGLIKTLAEEIEEQRKVNSQLXXXXXX 120
           PRD                           WIFGGLIKTLAEEIEEQRKVNSQL      
Sbjct: 61  PRDEQEAEEGGEEVAEGKGEVEEEADAGGGWIFGGLIKTLAEEIEEQRKVNSQLEAEEEA 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIQTFATRSESVLEGYRRDIQDLGSGLR 180
                                           LIQTFATRSESVLEGYRRDIQDLGSGLR
Sbjct: 121 AAAAAAAAAAAAEEEGGETAGSGDGGEWSFGGLIQTFATRSESVLEGYRRDIQDLGSGLR 180

Query: 181 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRLESXXXXXXXXXXXXXXXXSHANEALRSV 240
           L                            NRLES                SHANEALRSV
Sbjct: 181 LETATLRAAAARAAAAFPGALEAGASAASNRLESVGQAVDDLGAAAAVLLSHANEALRSV 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXWRASLPSKKYTRFEAQVLALRADPATFTEEPEDAD 300
                                    WRASLPSKKYTRFEAQVLALRADPATFTEEPEDAD
Sbjct: 241 DADGEDGAGDGSSHPSDSASASGASWRASLPSKKYTRFEAQVLALRADPATFTEEPEDAD 300

Query: 301 GFAKWRDAFRIDERKEEIEGVLKESPGLESFVERLVPSVVDYDMFWCRYFFAVDKLRQAE 360
           GFAKWRDAFRIDERKEEIEGVLKESPGLESFVERLVPSVVDYDMFWCRYFFAVDKLRQAE
Sbjct: 301 GFAKWRDAFRIDERKEEIEGVLKESPGLESFVERLVPSVVDYDMFWCRYFFAVDKLRQAE 360

Query: 361 DVRTKLVTRAMSKXXXXXXXXXXXXXXXXXXXXXXXXGANTVVNKKEEQIEEPVSHKTED 420
           DVRTKLVTRAMSK                        GANTVVNKKEEQIEEPVSHKTED
Sbjct: 361 DVRTKLVTRAMSKEDEEELSWDVDDDDEDDDNGDHKEGANTVVNKKEEQIEEPVSHKTED 420

Query: 421 DKQGADTPDVSEDKKTTLAAEKDGNGESKDEVAAPKSSNDMGREEKIDXXXXXXXXXXXX 480
           DKQGADTPDVSEDKKTTLAAEKDGNGESKDEVAAPKSSNDMGREEKID            
Sbjct: 421 DKQGADTPDVSEDKKTTLAAEKDGNGESKDEVAAPKSSNDMGREEKIDSSKESEFSAASP 480

Query: 481 XXXXXXDLSWEEIEDVGDEDEXXXXXXXXXXXXXAEDIRKRFSSVEDDEELSWDIDE 537
                 DLSWEEIEDVGDEDE             AEDIRKRFSSVEDDEELSWDIDE
Sbjct: 481 PSAQEEDLSWEEIEDVGDEDEKKKPIPRSSPPSKAEDIRKRFSSVEDDEELSWDIDE 537



>Os07g0647400 BSD domain containing protein
          Length = 460

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 71/99 (71%)

Query: 274 KYTRFEAQVLALRADPATFTEEPEDADGFAKWRDAFRIDERKEEIEGVLKESPGLESFVE 333
           +Y+RFEAQ+ AL++DPATFT +PED+D FA WR  F +DER  EIE +  ES  LE  VE
Sbjct: 158 RYSRFEAQLRALQSDPATFTSDPEDSDDFAAWRVGFSVDERSGEIEALCYESDALEGMVE 217

Query: 334 RLVPSVVDYDMFWCRYFFAVDKLRQAEDVRTKLVTRAMS 372
           +LVP  V+ ++FW RYF+ V +L+Q ED R KLV R  +
Sbjct: 218 KLVPGTVESEVFWARYFYRVHRLKQQEDARAKLVKRVFA 256



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,006,218
Number of extensions: 320352
Number of successful extensions: 1064
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 2
Length of query: 537
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 431
Effective length of database: 11,501,117
Effective search space: 4956981427
Effective search space used: 4956981427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)