Os01g0273300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BSD domain containing protein.
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Os01g0273300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BSD domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.48 | 0.324 | 11 | 0.532 | 0.144 | 1.09 | 0.198 | 0.487 | -0.0705 | 20.4 | 16.43 | 507 | -- | -- |
| 47.46 | 0.321 | 11 | 0.469 | 0.162 | 1.05 | 0.297 | -- | -0.0962 | 21.3 | 17.47 | 451 | -- | -- |
| 47.56 | 0.321 | 11 | 0.553 | 0.147 | 1.06 | -- | 0.591 | -0.0648 | 20 | 16.9 | 505 | -- | -- |
| 47.74 | 0.322 | 11 | 0.46 | 0.16 | 0.998 | -- | -- | -0.104 | 20.9 | 18.43 | 458 | -- | -- |
| 48.44 | 0.324 | 11 | 0.526 | -- | 1.16 | -- | 0.56 | -0.0879 | -- | 17.22 | 524 | -- | -- |
| 63.85 | 0.375 | 11 | 0.714 | 0.468 | -- | 0.442 | -- | 0.0832 | 19.2 | -- | -- | -- | -- |
| 64.36 | 0.376 | 11 | 0.706 | 0.47 | -- | -- | -- | 0.0845 | 19.1 | -- | -- | -- | -- |
| 48.6 | 0.325 | 11 | 0.425 | -- | 1.1 | -- | -- | -0.111 | -- | 18.7 | 519 | -- | -- |
| 52.41 | 0.337 | 11 | -- | 0.093 | 1.27 | -- | -- | -0.17 | 20.6 | 16.7 | 517 | -- | -- |
| 76 | 0.407 | 11 | 0.697 | -- | -- | -- | -- | 0.076 | -- | -- | -- | -- | -- |
| 77.48 | 0.412 | 11 | -- | 0.463 | -- | -- | -- | 0.00586 | 19.2 | -- | -- | -- | -- |
| 52.79 | 0.338 | 11 | -- | -- | 1.33 | -- | -- | -0.177 | -- | 16.75 | 532 | -- | -- |
| 88.8 | 0.44 | 11 | -- | -- | -- | -- | -- | -0.00129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 2 | 46.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 3 | 46.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 9 | 46.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 15 | 46.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 87 | 47.73 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 122 | 48.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 130 | 48.07 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 141 | 48.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 169 | 48.21 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 22 |
| 195 | 48.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 253 | 48.51 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 308 | 48.73 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 320 | 48.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 323 | 48.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 328 | 48.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 331 | 48.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 367 | 48.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 407 | 48.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 414 | 48.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 481 | 49.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 503 | 49.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 572 | 49.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 600 | 49.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 627 | 49.12 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 16 |
| 702 | 49.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 703 | 49.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 712 | 49.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 746 | 49.20 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 784 | 49.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 800 | 49.24 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 906 | 49.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 909 | 49.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 5 |