BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0268300 Os01g0268300|AK102391
         (729 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0268300  Similar to DNA gyrase B subunit                    1300   0.0  
Os02g0699700  Similar to DNA topoisomerase II                     119   1e-26

>Os01g0268300 Similar to DNA gyrase B subunit
          Length = 729

 Score = 1300 bits (3363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/667 (96%), Positives = 642/667 (96%)

Query: 63  NGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHL 122
           NGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHL
Sbjct: 63  NGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHL 122

Query: 123 VYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMH 182
           VYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMH
Sbjct: 123 VYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMH 182

Query: 183 AGGKFGGSKSGYTXXXXXXXXXXXXXNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSR 242
           AGGKFGGSKSGYT             NALSEALEVTVWRDGKEYRQNYSRGKAITMLTSR
Sbjct: 183 AGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSR 242

Query: 243 TLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQ 302
           TLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQ
Sbjct: 243 TLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQ 302

Query: 303 VQHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYSDTVLGYA 362
           VQHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYSDTVLGYA
Sbjct: 303 VQHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYSDTVLGYA 362

Query: 363 NSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNP 422
           NSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNP
Sbjct: 363 NSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNP 422

Query: 423 EFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNXXXXXXXXXXXXE 482
           EFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLN            E
Sbjct: 423 EFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARE 482

Query: 483 LVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKI 542
           LVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKI
Sbjct: 483 LVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKI 542

Query: 543 LNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLL 602
           LNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLL
Sbjct: 543 LNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLL 602

Query: 603 LTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNASYHIQRF 662
           LTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNASYHIQRF
Sbjct: 603 LTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNASYHIQRF 662

Query: 663 KGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNAASMV 722
           KGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNAASMV
Sbjct: 663 KGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNAASMV 722

Query: 723 NLEHLDI 729
           NLEHLDI
Sbjct: 723 NLEHLDI 729



>Os02g0699700 Similar to DNA topoisomerase II
          Length = 956

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 155/666 (23%), Positives = 268/666 (40%), Gaps = 67/666 (10%)

Query: 100 LDGVRTRPGMYIGS---------------------TGSRGLHHLVYEILDNAVDEAQAGY 138
           L+ +  RP  YIGS                     T   GL+ +  EIL NA D  Q   
Sbjct: 38  LEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYKIFDEILVNAADNKQRDP 97

Query: 139 AT-KVDVILHGDNS-VSVTDNGRGIPTDIHPQTKKSCVETVLTLMHAGGKFGGSKSGYTX 196
           +   + V +  D   +SV +NG GIP +IH +      E +   +     +  +    T 
Sbjct: 98  SMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIFGHLLTSSNYDDNVKKTTG 157

Query: 197 XXXXXXXXXXXXNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSRTLSDESSSRQG--- 253
                        +    +E    R  K+Y+Q +S       +  ++    +  +QG   
Sbjct: 158 GRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSEN-----MGKKSEPQITKCKQGENW 212

Query: 254 TRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQVQHNEYCYAGG 313
           TR+ F PD   F  T   + + +A   + +  +   L   +  E D  +V    + ++  
Sbjct: 213 TRVTFKPDLAKFNMT-HLENDVVALMRKRVVDMAGTLGKTVKVELDHQKVP--VHSFSDY 269

Query: 314 LVEYVKWLNTDKKSLHD-PIAFRKEMDGITVDVSLQWCSDSYSDTVLGYANSIRTIDGGT 372
           +  Y+K  + D+  +++ P   +K  D   V VSL   S+     V  + N I TI GGT
Sbjct: 270 VKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSL---SEGQFQQV-SFVNRIATIKGGT 325

Query: 373 HIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQTKTRL 432
           H+D +   +   + N   K    ++K+  +   +V+  +   +   + NP F+ QTK  L
Sbjct: 326 HVDYVTNQIATHVMNIVNK----RNKNAHMKAHNVKSHLWVFVNALIDNPAFDSQTKETL 381

Query: 433 GNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNXXXXXXXXXXXXELVRTKSVLKS 492
                      + Q +     EL  D L  + S ++             + ++     K 
Sbjct: 382 ----------TTRQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKR 431

Query: 493 SSLPG--KLADC---ASSDPEESEIFIVEGDSAGGSAKQGRD---RKFQAILPLRGKILN 544
           S L G  KL D       D     + + EGDSA   A  G     R +  + PLRGK+LN
Sbjct: 432 SRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLN 491

Query: 545 IERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLT 604
           +       + +N EIQN+   LGL    +  + + LRY  ++I+TD D DG+HI+ LL+ 
Sbjct: 492 VREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSHIKGLLIN 551

Query: 605 FFFRYQKALFDEGCIYVG-VPPLYKVERGKQAHYC---YDDADLKELVNTFPTNAS-YHI 659
           F   +  +L       V  + P+ K    +        Y   + ++   +   NAS + I
Sbjct: 552 FIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQWKESLGGNASGWSI 611

Query: 660 QRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNAA 719
           + +KGLG    ++  +   D  +   K    ++  + N +  +    R+  RK+ + N  
Sbjct: 612 KYYKGLGTSTSSEGRQYFQDIAKHK-KDFVWKNDQDDNDIELAFSKKRITDRKEWLTNFQ 670

Query: 720 SMVNLE 725
           S  +L+
Sbjct: 671 SGTHLD 676



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,688,237
Number of extensions: 843469
Number of successful extensions: 1858
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1854
Number of HSP's successfully gapped: 2
Length of query: 729
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 621
Effective length of database: 11,396,689
Effective search space: 7077343869
Effective search space used: 7077343869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)