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Os01g0268300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA gyrase B subunit.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0258) R2 : 0.79
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.0696) R2dC : 0.256 R2C : 0.376
β3 : -1.14 (0.052) R2dE : 0.25 R2E : 0.404
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.752 (0.0547) R2dN8 : 0.112 R2N8 : 0.143
σ : 0.481
deviance : 106.55
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C
peak time of C : 18.9
E
wheather : temperature
threshold : 20.46
memory length : 175
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.7
open length of G : 12.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.98 0.477 11.5 -0.032 1.71 -1.01 0.478 1.04 -0.755 18.6 20.3 95 19 12.1
105.58 0.479 11.5 -0.191 1.62 -1.05 0.418 -- -0.79 18.7 20.5 169 18.8 12.2
103.5 0.474 11.5 -0.0301 1.71 -1.01 -- 1.05 -0.749 18.6 20.32 96 18.9 12.1
105.62 0.479 11.5 -0.208 1.61 -1.1 -- -- -0.778 18.8 20.51 176 18.6 12.4
131.85 0.535 11.5 0.136 -- -2.06 -- 0.99 -0.714 -- 19.08 361 20.6 10.4
148.08 0.57 11.6 -0.331 2.3 -- 0.0722 -- -0.969 17.1 -- -- -- --
148.1 0.57 11.6 -0.331 2.3 -- -- -- -0.969 17.1 -- -- -- --
133.08 0.537 11.5 0.00335 -- -2.1 -- -- -0.759 -- 18.89 362 20.7 10.4
106.55 0.481 11.5 -- 1.56 -1.14 -- -- -0.752 18.9 20.46 175 18.7 12.4
425 0.963 11.5 -0.413 -- -- -- -- -1.03 -- -- -- -- --
150.98 0.575 11.6 -- 2.3 -- -- -- -0.932 17.1 -- -- -- --
133.07 0.537 11.5 -- -- -2.09 -- -- -0.762 -- 18.87 362 20.7 10.4
429.5 0.967 11.5 -- -- -- -- -- -0.981 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.30 temperature 20.0 90 > th dose independent rect. 19 12
2 106.40 temperature 20.0 270 > th dose independent rect. 17 14
24 110.81 humidity 80.0 1440 < th dose independent rect. 8 6
30 111.29 humidity 80.0 1440 > th dose independent rect. 8 6
37 111.95 temperature 20.0 90 > th dose independent rect. 13 18
39 112.19 temperature 20.0 90 > th dose independent sin 10 NA
40 112.19 humidity 80.0 1440 < th dose independent rect. 8 2
43 112.34 humidity 80.0 1440 > th dose independent rect. 8 2
49 112.60 temperature 20.0 270 > th dose independent rect. 11 20
64 113.27 temperature 20.0 720 > th dose independent rect. 19 4
76 113.62 temperature 15.0 270 > th dose dependent rect. 19 12
83 113.79 humidity 70.0 1440 > th dose independent rect. 10 3
95 114.25 humidity 90.0 4320 > th dose dependent rect. 7 1
96 114.26 humidity 70.0 1440 > th dose dependent rect. 8 6
128 114.94 humidity 70.0 1440 > th dose independent rect. 20 18
130 114.95 humidity 70.0 1440 > th dose independent rect. 22 16
165 115.43 precipitation 0.1 14400 < th dose independent rect. 14 2
166 115.43 precipitation 0.1 14400 < th dose dependent rect. 14 2
175 115.55 precipitation 0.1 14400 > th dose independent rect. 14 2
176 115.55 precipitation 0.1 14400 > th dose dependent rect. 14 2
181 115.71 temperature 20.0 10 < th dose independent sin 9 NA
183 115.78 temperature 20.0 90 < th dose independent sin 10 NA
185 115.79 humidity 90.0 1440 < th dose dependent rect. 9 3
193 115.92 humidity 90.0 1440 < th dose dependent rect. 8 5
209 116.09 humidity 70.0 1440 > th dose dependent rect. 11 1
244 116.30 humidity 70.0 1440 > th dose independent sin 5 NA
324 116.95 temperature 20.0 90 < th dose independent rect. 21 13
325 116.95 humidity 90.0 1440 < th dose dependent rect. 3 11
333 117.00 humidity 70.0 1440 < th dose independent sin 5 NA
336 117.01 temperature 20.0 90 < th dose independent rect. 21 10
339 117.02 humidity 80.0 1440 < th dose dependent rect. 22 15
344 117.04 humidity 90.0 14400 > th dose dependent rect. 15 2
366 117.18 temperature 20.0 10 < th dose independent rect. 22 12
367 117.18 humidity 90.0 1440 < th dose dependent rect. 5 8
388 117.31 precipitation 0.1 14400 > th dose independent rect. 7 9
390 117.31 temperature 20.0 90 < th dose independent rect. 19 15
414 117.45 temperature 20.0 90 < th dose independent rect. 19 12
419 117.47 temperature 20.0 10 < th dose independent rect. 22 8
425 117.50 temperature 25.0 720 < th dose dependent rect. 19 6
443 117.58 temperature 20.0 10 < th dose independent rect. 20 14
478 117.68 humidity 80.0 14400 > th dose independent rect. 13 1
487 117.72 temperature 25.0 14400 < th dose independent rect. 10 1
495 117.74 precipitation 0.1 14400 < th dose independent rect. 9 7
496 117.74 precipitation 0.1 14400 < th dose dependent rect. 9 7
552 117.93 precipitation 0.1 14400 > th dose independent rect. 6 11
555 117.94 temperature 20.0 10 < th dose independent rect. 20 10
615 118.15 humidity 80.0 1440 < th dose dependent sin 7 NA
618 118.17 precipitation 0.1 14400 < th dose independent rect. 6 11
623 118.17 precipitation 0.1 14400 < th dose dependent rect. 6 11
629 118.20 temperature 25.0 14400 > th dose independent rect. 10 1
633 118.22 temperature 15.0 720 > th dose dependent rect. 19 3
655 118.34 temperature 20.0 90 < th dose independent rect. 23 6
669 118.37 precipitation 0.1 14400 > th dose dependent rect. 6 10
709 118.46 temperature 15.0 720 > th dose dependent rect. 19 5
725 118.53 wind 5.0 43200 < th dose dependent rect. 5 1
759 118.61 temperature 25.0 720 < th dose dependent rect. 21 2
770 118.63 wind 9.0 43200 < th dose dependent rect. 5 1
799 118.73 wind 1.0 43200 > th dose dependent rect. 5 1
829 118.85 temperature 20.0 14400 < th dose independent rect. 20 1
883 118.99 radiation 10.0 1440 > th dose independent rect. 8 2
886 119.00 humidity 90.0 1440 < th dose dependent sin 4 NA
901 119.06 wind 1.0 43200 > th dose independent rect. 21 9
932 119.19 humidity 90.0 14400 > th dose dependent rect. 13 4
937 119.22 wind 1.0 43200 < th dose independent rect. 21 9
949 119.28 wind 1.0 14400 > th dose dependent rect. 23 7
952 119.30 humidity 80.0 14400 > th dose dependent rect. 9 9
955 119.31 wind 9.0 14400 < th dose dependent rect. 23 7
968 119.36 wind 1.0 14400 > th dose independent rect. 4 3
983 119.38 humidity 70.0 1440 > th dose independent rect. 20 22