Os02g0699700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA topoisomerase II.
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Os02g0699700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA topoisomerase II.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.41 | 0.424 | 6.82 | 0.834 | 0.746 | -1.4 | 0.689 | 0.791 | 0.0674 | 20.5 | 18.56 | 271 | -- | -- |
| 82.02 | 0.422 | 6.82 | 0.727 | 0.753 | -1.37 | 0.657 | -- | 0.0423 | 20.5 | 18.21 | 290 | -- | -- |
| 82.86 | 0.424 | 6.81 | 0.844 | 0.758 | -1.4 | -- | 0.982 | 0.0744 | 20.5 | 18.53 | 289 | -- | -- |
| 83.64 | 0.426 | 6.83 | 0.669 | 0.747 | -1.37 | -- | -- | 0.0267 | 20.5 | 18.1 | 276 | -- | -- |
| 96.26 | 0.459 | 6.81 | 0.665 | -- | -1.42 | -- | 0.174 | 0.0262 | -- | 17.73 | 43 | -- | -- |
| 110.71 | 0.493 | 6.88 | 0.358 | 0.628 | -- | 0.46 | -- | -0.205 | 23.1 | -- | -- | -- | -- |
| 111.61 | 0.495 | 6.88 | 0.339 | 0.625 | -- | -- | -- | -0.206 | 23.2 | -- | -- | -- | -- |
| 96.18 | 0.457 | 6.82 | 0.633 | -- | -1.41 | -- | -- | 0.0143 | -- | 17.7 | 2 | -- | -- |
| 94.12 | 0.452 | 6.86 | -- | 0.693 | -1.08 | -- | -- | -0.0916 | 21 | 19.04 | 276 | -- | -- |
| 136.03 | 0.545 | 6.86 | 0.354 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 114.65 | 0.501 | 6.89 | -- | 0.628 | -- | -- | -- | -0.244 | 23.2 | -- | -- | -- | -- |
| 106.12 | 0.481 | 6.84 | -- | -- | -1.23 | -- | -- | -0.0736 | -- | 18.7 | 3 | -- | -- |
| 139.34 | 0.551 | 6.87 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 2 | 81.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 6 | 82.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 7 | 82.42 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 16 | 82.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 18 | 83.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 28 | 83.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 33 | 83.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 41 | 83.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 63 | 84.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 93 | 84.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 118 | 84.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 133 | 84.93 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 145 | 84.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 147 | 84.98 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 159 | 85.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 181 | 85.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 193 | 85.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 205 | 85.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 242 | 85.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 248 | 85.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 287 | 85.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 321 | 85.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 347 | 85.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 407 | 86.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 501 | 86.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 504 | 86.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 519 | 86.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 572 | 86.62 | temperature | 15 | 10 | > th | dose dependent | sin | 16 | NA |
| 584 | 86.65 | temperature | 20 | 270 | > th | dose dependent | sin | 18 | NA |
| 605 | 86.69 | temperature | 20 | 90 | > th | dose dependent | sin | 16 | NA |
| 655 | 86.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 666 | 86.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 694 | 86.89 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 731 | 86.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 758 | 86.97 | temperature | 20 | 720 | > th | dose dependent | sin | 22 | NA |
| 776 | 87.00 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 912 | 87.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 20 |