BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0266500 Os01g0266500|AK101084
         (309 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0266500  Phenazine biosynthesis PhzC/PhzF protein famil...   565   e-161
Os03g0434400  Phenazine biosynthesis PhzC/PhzF protein famil...   320   6e-88

>Os01g0266500 Phenazine biosynthesis PhzC/PhzF protein family protein
          Length = 309

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/309 (90%), Positives = 280/309 (90%)

Query: 1   MVKNAIQYAVVDAFAAEPFKGNPAAVCLLEGXXXXXXXXXRWMQSVAAEFNLSETAFLIR 60
           MVKNAIQYAVVDAFAAEPFKGNPAAVCLLEG         RWMQSVAAEFNLSETAFLIR
Sbjct: 1   MVKNAIQYAVVDAFAAEPFKGNPAAVCLLEGEDAAAAADERWMQSVAAEFNLSETAFLIR 60

Query: 61  XXXXXXXXXXXXXRFRLRWFTPVAEVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVT 120
                        RFRLRWFTPVAEVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVT
Sbjct: 61  DPSSSAAAADAAPRFRLRWFTPVAEVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVT 120

Query: 121 RSGILTAKKVXXXXXXXNDGGVPGEEKLFIELDFPMIDLVEYDSAETLSIPETLNGARVV 180
           RSGILTAKKV       NDGGVPGEEKLFIELDFPMIDLVEYDSAETLSIPETLNGARVV
Sbjct: 121 RSGILTAKKVPAPPPPANDGGVPGEEKLFIELDFPMIDLVEYDSAETLSIPETLNGARVV 180

Query: 181 SVWKSSTAGDLIVELSSGKEVADIIPNINEIKKCDGRGVIVTGPAPAGSDYDFFSRFFCP 240
           SVWKSSTAGDLIVELSSGKEVADIIPNINEIKKCDGRGVIVTGPAPAGSDYDFFSRFFCP
Sbjct: 181 SVWKSSTAGDLIVELSSGKEVADIIPNINEIKKCDGRGVIVTGPAPAGSDYDFFSRFFCP 240

Query: 241 KFGIDEDPVCGSAHCVLAPYWGGKLGKQKLTAFQASPRSGTLYLELDGENRRVRIQGEAV 300
           KFGIDEDPVCGSAHCVLAPYWGGKLGKQKLTAFQASPRSGTLYLELDGENRRVRIQGEAV
Sbjct: 241 KFGIDEDPVCGSAHCVLAPYWGGKLGKQKLTAFQASPRSGTLYLELDGENRRVRIQGEAV 300

Query: 301 TVMAGTLLA 309
           TVMAGTLLA
Sbjct: 301 TVMAGTLLA 309



>Os03g0434400 Phenazine biosynthesis PhzC/PhzF protein family protein
          Length = 303

 Score =  320 bits (821), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 174/308 (56%), Positives = 208/308 (67%), Gaps = 17/308 (5%)

Query: 1   MVKNAIQYAVVDAFAAEPFKGNPAAVCLLEGXXXXXXXXXRWMQSVAAEFNLSETAFLIR 60
           M + AI YAVVDAF  EPFKGN AAVCLLE          +WMQSVAAEFN S TAFL+R
Sbjct: 1   MPERAITYAVVDAFTDEPFKGNTAAVCLLE-ESWEEQLDEQWMQSVAAEFNTSITAFLVR 59

Query: 61  XXXXXXXXXXXXXRFRLRWFTPVAEVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVT 120
                        +F +RWFTPV E  LCGH TLA+AH+L ++ L K        ++F+ 
Sbjct: 60  ADADAANP-----QFHIRWFTPVRESELCGHGTLAAAHYLISSGLVK-----CNAIDFLA 109

Query: 121 RSGILTAKKVXXXXXXXNDGGVPGEE---KLFIELDFPMIDLVEYDSAETLSIPETLNGA 177
           +SG LTAKKV            P +E   K  IELDFP+I +V+    E  SIPETLNGA
Sbjct: 110 KSGFLTAKKVVGLKQSSTLIS-PLQEACTKFLIELDFPLIPVVKCSPLEMPSIPETLNGA 168

Query: 178 RVVSVWK--SSTAGDLIVELSSGKEVADIIPNINEIKKCDGRGVIVTGPAPAGSDYDFFS 235
            V +V K  S +A DLIVEL+S +EV ++ PNI+E+ +  GRGV VTGPAP GS YDFFS
Sbjct: 169 SVSNVLKTVSDSATDLIVELNSSEEVVNVRPNISELVQSAGRGVAVTGPAPVGSSYDFFS 228

Query: 236 RFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLTAFQASPRSGTLYLELDGENRRVRI 295
           RFFCPK+G++EDPVCGS HC LAPYWG KLGKQ +TA  ASPRSGTLYL+ D   +RV+I
Sbjct: 229 RFFCPKYGLNEDPVCGSVHCALAPYWGKKLGKQCMTASMASPRSGTLYLQWDEAAQRVQI 288

Query: 296 QGEAVTVM 303
           +GEAVTVM
Sbjct: 289 RGEAVTVM 296



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,354,485
Number of extensions: 367843
Number of successful extensions: 561
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)