Os03g0434400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phenazine biosynthesis PhzC/PhzF protein family protein.
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Os03g0434400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phenazine biosynthesis PhzC/PhzF protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.71 | 0.516 | 6.95 | -0.115 | 1.7 | -2.26 | -0.145 | 0.545 | 0.0879 | 20.8 | 0.5399 | 285 | 23 | -- |
| 121.27 | 0.513 | 6.96 | -0.115 | 1.71 | -2.27 | -0.55 | -- | 0.0794 | 20.6 | 0.5386 | 285 | 22.8 | -- |
| 120.64 | 0.512 | 6.96 | -0.112 | 1.73 | -2.27 | -- | 0.632 | 0.0787 | 20.6 | 0.54 | 285 | 22.6 | -- |
| 122.21 | 0.515 | 6.95 | -0.105 | 1.73 | -2.3 | -- | -- | 0.0827 | 20.4 | 0.53 | 282 | 22.4 | -- |
| 158.87 | 0.587 | 6.91 | -0.148 | -- | -3.42 | -- | 0.572 | 0.0894 | -- | -1.089e-06 | 570 | 0.185 | -- |
| 158.55 | 0.59 | 6.99 | -0.172 | 3.49 | -- | -0.378 | -- | 0.0954 | 22.6 | -- | -- | -- | -- |
| 159.14 | 0.591 | 6.99 | -0.157 | 3.5 | -- | -- | -- | 0.0965 | 22.6 | -- | -- | -- | -- |
| 159.14 | 0.588 | 6.9 | -0.157 | -- | -3.47 | -- | -- | 0.0963 | -- | -11.62 | 521 | 23.8 | -- |
| 122.39 | 0.515 | 6.95 | -- | 1.73 | -2.32 | -- | -- | 0.103 | 20.3 | 0.53 | 282 | 22.4 | -- |
| 909.73 | 1.41 | 6.9 | -0.0944 | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
| 159.8 | 0.591 | 6.99 | -- | 3.49 | -- | -- | -- | 0.114 | 22.5 | -- | -- | -- | -- |
| 159.8 | 0.589 | 6.9 | -- | -- | -3.47 | -- | -- | 0.114 | -- | -12.34 | 527 | 23.8 | -- |
| 909.97 | 1.41 | 6.9 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.16 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 6 | 120.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 11 | 121.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 12 | 121.46 | radiation | 1.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 13 | 121.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 15 | 121.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 18 | 122.08 | radiation | 1.0 | 270 | > th | dose independent | sin | 5 | NA |
| 19 | 122.08 | radiation | 1.0 | 270 | < th | dose independent | sin | 5 | NA |
| 25 | 122.49 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 40 | 123.75 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 44 | 123.95 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 45 | 123.96 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 46 | 124.00 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 47 | 124.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 48 | 124.18 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 49 | 124.20 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 5 |
| 69 | 124.49 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 4 |
| 71 | 124.64 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 3 |
| 83 | 125.05 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 84 | 125.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 87 | 125.24 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 4 |
| 88 | 125.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 92 | 125.41 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 100 | 125.66 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 105 | 125.84 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 17 |
| 108 | 125.91 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 111 | 125.99 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 3 |
| 145 | 126.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 3 |
| 146 | 126.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 148 | 126.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 168 | 126.59 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 4 |
| 177 | 126.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 181 | 126.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 182 | 126.66 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 3 |
| 184 | 126.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 185 | 126.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 190 | 126.79 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 191 | 126.86 | wind | 7.0 | 30 | < th | dose independent | rect. | 14 | 18 |
| 193 | 126.88 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 206 | 127.11 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 211 | 127.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 217 | 127.29 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 223 | 127.34 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 243 | 127.63 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 7 |
| 245 | 127.65 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 249 | 127.68 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 262 | 127.80 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 7 |
| 277 | 127.88 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 294 | 128.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 296 | 128.04 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 297 | 128.04 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 298 | 128.04 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 6 |
| 299 | 128.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 300 | 128.04 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 303 | 128.07 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 305 | 128.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 5 |
| 307 | 128.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 318 | 128.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 325 | 128.20 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 1 | 7 |
| 328 | 128.22 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 330 | 128.22 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 331 | 128.22 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 4 |
| 332 | 128.22 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 4 |
| 334 | 128.22 | temperature | 10.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 336 | 128.22 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 4 |
| 349 | 128.26 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 363 | 128.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 364 | 128.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 365 | 128.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 374 | 128.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 380 | 128.49 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 408 | 128.57 | wind | 7.0 | 30 | < th | dose independent | rect. | 1 | 7 |
| 411 | 128.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 419 | 128.64 | humidity | 70.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 423 | 128.68 | wind | 9.0 | 1440 | < th | dose independent | rect. | 2 | 7 |
| 424 | 128.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 427 | 128.68 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 429 | 128.68 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 430 | 128.68 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 435 | 128.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 21 |
| 441 | 128.77 | temperature | 10.0 | 30 | > th | dose independent | rect. | 1 | 7 |
| 443 | 128.77 | temperature | 30.0 | 30 | < th | dose independent | rect. | 1 | 7 |
| 444 | 128.77 | humidity | 50.0 | 30 | > th | dose independent | rect. | 1 | 7 |
| 453 | 128.79 | wind | 9.0 | 10 | < th | dose dependent | rect. | 8 | 5 |
| 454 | 128.81 | radiation | 40.0 | 30 | < th | dose independent | rect. | 1 | 7 |
| 459 | 128.83 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 476 | 128.90 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 5 |
| 508 | 129.04 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 7 |
| 510 | 129.05 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 7 |
| 512 | 129.05 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 1 | 7 |
| 515 | 129.08 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 556 | 129.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 17 |
| 559 | 129.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 17 |
| 580 | 129.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 583 | 129.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 587 | 129.39 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 600 | 129.45 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 18 |
| 601 | 129.45 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 614 | 129.51 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 17 |
| 617 | 129.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 621 | 129.55 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 630 | 129.58 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 660 | 129.71 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 663 | 129.73 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 20 |
| 664 | 129.73 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 666 | 129.75 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 680 | 129.80 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 17 |
| 695 | 129.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 719 | 130.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 21 |
| 722 | 130.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 735 | 130.16 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 17 |
| 736 | 130.16 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 743 | 130.20 | humidity | 50.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 749 | 130.25 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 754 | 130.27 | radiation | 40.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 755 | 130.28 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 758 | 130.30 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 778 | 130.42 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 807 | 130.56 | temperature | 15.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 832 | 130.64 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 837 | 130.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 19 |
| 838 | 130.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 843 | 130.78 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 856 | 130.85 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 862 | 130.88 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 890 | 131.00 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 903 | 131.13 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 913 | 131.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 936 | 131.41 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 937 | 131.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 940 | 131.41 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 942 | 131.41 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 943 | 131.41 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 945 | 131.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 970 | 131.56 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 972 | 131.57 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 976 | 131.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 991 | 131.68 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 5 |