BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0254800 Os01g0254800|AK067017
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0254800 Conserved hypothetical protein 259 2e-69
Os02g0478050 Conserved hypothetical protein 148 4e-36
Os02g0800600 Conserved hypothetical protein 83 2e-16
>Os01g0254800 Conserved hypothetical protein
Length = 250
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/223 (64%), Positives = 143/223 (64%)
Query: 28 AATDPRATTVAAALDCRHSAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 87
AATDPRATTVAAALDCRHSAVT
Sbjct: 28 AATDPRATTVAAALDCRHSAVTHRRIRRRRRPRLPPLRRRRIRRRRHPRLPPLRLRRIRR 87
Query: 88 XAATDPRRRLALNQXXXXXXXXXXXRIYVTVPSXXXXXXXXXXNGSWWPWRILGPDEXXX 147
AATDPRRRLALNQ RIYVTVPS NGSWWPWRILGPDE
Sbjct: 88 LAATDPRRRLALNQSPSPSSHPSSSRIYVTVPSPHPHDDPRRRNGSWWPWRILGPDELSA 147
Query: 148 XXXXXXXXXXXXXXXXXFSRLIPAPAPSSGRVRVRDSKSRWSDFSTPALASHRLRSARQQ 207
FSRLIPAPAPSSGRVRVRDSKSRWSDFSTPALASHRLRSARQQ
Sbjct: 148 SQRSSLLLRSGLSDAALFSRLIPAPAPSSGRVRVRDSKSRWSDFSTPALASHRLRSARQQ 207
Query: 208 GLCREEKVELWKVIAGSFGSFFEDFSNWYVLINQLEFWSRYSL 250
GLCREEKVELWKVIAGSFGSFFEDFSNWYVLINQLEFWSRYSL
Sbjct: 208 GLCREEKVELWKVIAGSFGSFFEDFSNWYVLINQLEFWSRYSL 250
>Os02g0478050 Conserved hypothetical protein
Length = 221
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/183 (52%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 28 AATDPRATTVAAALDCRHSAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 87
AATDPRATTVAAA DC H AVT
Sbjct: 28 AATDPRATTVAAARDCLHFAVTHRRIRRRRRRRPRLPLLRRRHIRRRRHPRLPPLRLRRI 87
Query: 88 X--AATDPRRRLALNQXXXXXXXXXXXRIYVTVPSXXXXXXXXXXNGSWWPWRILGPDEX 145
AATDPR RLALNQ RIYVTVPS NGSWWPWRILGPDE
Sbjct: 88 RRLAATDPRCRLALNQSPSPSSHPSSSRIYVTVPSPHPHDDPRRRNGSWWPWRILGPDEL 147
Query: 146 XXXXXXXXXXXXXXXXXXXFSRLIPAPAPSSGRVRVRDSKSRWSDFSTPALASHRLRSAR 205
FS LIPAPAPSSGRVRVRDSKSRWSDFSTPALASHRLRSAR
Sbjct: 148 PASQRSSLLLRSGLSDAALFSWLIPAPAPSSGRVRVRDSKSRWSDFSTPALASHRLRSAR 207
Query: 206 QQG 208
QQG
Sbjct: 208 QQG 210
>Os02g0800600 Conserved hypothetical protein
Length = 67
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 42/44 (95%)
Query: 165 FSRLIPAPAPSSGRVRVRDSKSRWSDFSTPALASHRLRSARQQG 208
FSRL PAPAPSSG VRVRDSKSRWSDFSTPALASHRLRSARQQG
Sbjct: 23 FSRLTPAPAPSSGHVRVRDSKSRWSDFSTPALASHRLRSARQQG 66
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.131 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,255,469
Number of extensions: 151224
Number of successful extensions: 395
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 3
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)