BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0249900 Os01g0249900|AK072886
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0249900  Protein of unknown function DUF573 family protein   398   e-111
Os03g0370250  Protein of unknown function DUF573 family protein    74   1e-13
Os07g0636100  Protein of unknown function DUF573 family protein    74   2e-13

>Os01g0249900 Protein of unknown function DUF573 family protein
          Length = 312

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/312 (67%), Positives = 211/312 (67%)

Query: 1   MPCGYGVPIISTLDFTARRGTTFASHQYDTGPFYDEIRRRLSFDFTKSQLVEXXXXXXXX 60
           MPCGYGVPIISTLDFTARRGTTFASHQYDTGPFYDEIRRRLSFDFTKSQLVE        
Sbjct: 1   MPCGYGVPIISTLDFTARRGTTFASHQYDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKK 60

Query: 61  XXXCXXXXXXXXXXXXXXXXXXXXXEGAIYDLARHIWPPALKRDGTASDDDDINXXXXXX 120
              C                     EGAIYDLARHIWPPALKRDGTASDDDDIN      
Sbjct: 61  YRLCAARMASSPHAAAAGFAFRTPHEGAIYDLARHIWPPALKRDGTASDDDDINPAAAAA 120

Query: 121 XXXXXXXXXXEDGFGGSAXXXXXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXXXXDGAHQ 180
                     EDGFGGSA                  M                  DGAHQ
Sbjct: 121 TAAVMTPVAMEDGFGGSAPTPTPTPRGRGGRRVRRRMAQEQEAAALPSAPALTSTDGAHQ 180

Query: 181 EPLVAAMENTLPQIAQLPPVSETEPMPVIANGANEEAVRSVLSRLLKEFITSFAVVGQTX 240
           EPLVAAMENTLPQIAQLPPVSETEPMPVIANGANEEAVRSVLSRLLKEFITSFAVVGQT 
Sbjct: 181 EPLVAAMENTLPQIAQLPPVSETEPMPVIANGANEEAVRSVLSRLLKEFITSFAVVGQTG 240

Query: 241 XXXXXXXXXXXXXXXXDIAGLGFGIAGLNPGVPGADRWRQHQILELEVYLKRIELVREQV 300
                           DIAGLGFGIAGLNPGVPGADRWRQHQILELEVYLKRIELVREQV
Sbjct: 241 PGMGLNMGFGGAGLNADIAGLGFGIAGLNPGVPGADRWRQHQILELEVYLKRIELVREQV 300

Query: 301 TAALDELRSSEG 312
           TAALDELRSSEG
Sbjct: 301 TAALDELRSSEG 312



>Os03g0370250 Protein of unknown function DUF573 family protein
          Length = 413

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 14  DFTARRGTTFASHQYDTGPFYDEIRRRLSFDFTKSQLVEXXXXXXXXXXXCXXXXXXXXX 73
           +FTA+RGT FASHQYDT PFY+++RRRL  DF+KSQLVE           C         
Sbjct: 137 EFTAQRGTAFASHQYDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNC----VDRLR 192

Query: 74  XXXXXXXXXXXXEGAIYDLARHIWPPALKRDG 105
                       E AI+++AR IW P   + G
Sbjct: 193 ATGQSFSFRSPHEQAIFEIARGIWRPTSDKHG 224



>Os07g0636100 Protein of unknown function DUF573 family protein
          Length = 251

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 14  DFTARRGTTFASHQYDTGPFYDEIRRRLSFDFTKSQLVEXXXXXXXXXXXCXXXXXXXXX 73
           +FTA RGT FASHQYDT PFY+++R RL   F+KSQLVE           C         
Sbjct: 102 EFTAARGTAFASHQYDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNC----VSRLR 157

Query: 74  XXXXXXXXXXXXEGAIYDLARHIWPPALK--RDGTASDDD 111
                       E AI+++AR+IW P  K  RDG + D+D
Sbjct: 158 GSGSAFSFRSPHEQAIFEIARNIWRPTNKHGRDGDSDDED 197



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,333,454
Number of extensions: 210712
Number of successful extensions: 684
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)