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Os07g0636100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF573 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.00996) R2 : 0.739
β1 : 1.21 (0.0365) R2dD : 0.656 R2D : 0.441
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.419 (0.0213) R2dN8 : 0.297 R2N8 : 0.0823
σ : 0.187
deviance : 16.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.85 0.175 11.8 1.15 0.137 0.102 0.259 0.616 0.424 10.8 9.795 1491 -- --
14.37 0.177 11.8 1.17 0.128 0.106 0.211 -- 0.453 10.9 47.11 19558 -- --
14.02 0.174 11.8 1.16 0.113 0.0832 -- 0.562 0.423 10.8 9.719 1380 -- --
14.53 0.178 11.8 1.21 0.12 0.118 -- -- 0.461 11.3 23.89 25249 -- --
14.41 0.177 11.8 1.14 -- 0.139 -- 0.756 0.401 -- 7.665 1267 -- --
14.77 0.18 11.8 1.21 0.133 -- 0.203 -- 0.419 10.9 -- -- -- --
14.94 0.181 11.8 1.22 0.132 -- -- -- 0.419 10.8 -- -- -- --
14.87 0.18 11.8 1.22 -- 0.177 -- -- 0.436 -- 7.145 1219 -- --
46.86 0.319 11.9 -- 0.126 0.536 -- -- 0.287 10.5 84.38 47520 -- --
16.02 0.187 11.8 1.21 -- -- -- -- 0.419 -- -- -- -- --
53.85 0.343 11.9 -- 0.124 -- -- -- 0.284 10.2 -- -- -- --
47.83 0.322 11.9 -- -- 0.534 -- -- 0.287 -- 108.5 47520 -- --
54.79 0.345 11.9 -- -- -- -- -- 0.284 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.61 radiation 10.0 14400 < th dose dependent rect. 13 1
2 13.67 radiation 10.0 14400 < th dose independent rect. 13 1
4 13.68 radiation 40.0 720 > th dose dependent rect. 8 2
24 13.72 precipitation 0.1 4320 > th dose independent rect. 21 8
25 13.73 precipitation 0.1 4320 < th dose independent rect. 21 8
28 13.73 precipitation 0.1 4320 < th dose dependent rect. 21 8
31 13.75 radiation 10.0 90 < th dose independent rect. 6 4
32 13.75 wind 1.0 43200 < th dose independent rect. 2 5
36 13.76 precipitation 0.1 4320 < th dose independent rect. 20 11
38 13.76 precipitation 0.1 4320 < th dose dependent rect. 20 11
39 13.77 radiation 10.0 14400 > th dose independent rect. 13 1
41 13.77 precipitation 0.1 4320 > th dose independent rect. 20 11
43 13.77 atmosphere 995.0 270 > th dose dependent rect. 9 8
50 13.78 atmosphere 1000.0 30 > th dose independent rect. 10 20
51 13.78 radiation 30.0 90 < th dose dependent rect. 6 4
54 13.79 precipitation 0.1 4320 < th dose independent rect. 20 14
56 13.79 atmosphere 995.0 720 > th dose dependent rect. 9 5
57 13.79 precipitation 0.1 4320 < th dose dependent rect. 20 14
82 13.82 wind 1.0 43200 < th dose independent rect. 3 3
91 13.82 atmosphere 995.0 720 > th dose dependent rect. 10 3
97 13.82 precipitation 0.1 4320 > th dose dependent rect. 20 9
100 13.83 wind 3.0 1440 > th dose independent rect. 2 5
102 13.83 humidity 90.0 1440 > th dose independent rect. 9 7
108 13.84 temperature 20.0 270 > th dose independent rect. 6 1
109 13.84 radiation 40.0 14400 < th dose independent rect. 10 1
113 13.84 atmosphere 1000.0 90 > th dose independent rect. 10 7
117 13.84 precipitation 0.1 1440 < th dose independent rect. 17 13
120 13.84 wind 7.0 4320 > th dose independent rect. 15 17
123 13.84 radiation 30.0 10 < th dose independent rect. 11 19
131 13.84 precipitation 0.1 1440 < th dose dependent rect. 17 13
137 13.85 wind 7.0 4320 > th dose independent rect. 15 15
141 13.85 wind 7.0 4320 < th dose independent rect. 14 18
144 13.85 wind 3.0 1440 < th dose dependent rect. 16 2
148 13.85 radiation 10.0 1440 < th dose dependent rect. 6 11
149 13.85 atmosphere 995.0 30 > th dose dependent rect. 10 20
150 13.86 wind 3.0 1440 > th dose independent rect. 17 1
151 13.86 atmosphere 995.0 43200 > th dose independent rect. 17 1
155 13.86 wind 1.0 43200 > th dose independent rect. 2 5
160 13.86 atmosphere 1000.0 270 > th dose independent rect. 8 9
170 13.86 wind 3.0 43200 < th dose dependent rect. 4 1
171 13.86 radiation 30.0 14400 > th dose dependent rect. 10 1
194 13.87 radiation 40.0 14400 > th dose independent rect. 10 1
202 13.87 wind 1.0 43200 < th dose independent rect. 2 8
204 13.87 precipitation 0.1 1440 > th dose independent rect. 17 13
213 13.87 wind 9.0 43200 > th dose dependent rect. 20 1
214 13.87 atmosphere 995.0 4320 > th dose dependent rect. 13 1
217 13.87 wind 1.0 43200 < th dose dependent rect. 2 4
221 13.87 precipitation 0.1 4320 > th dose dependent rect. 21 6
232 13.88 wind 3.0 1440 < th dose independent rect. 17 1
233 13.88 humidity 90.0 1440 > th dose independent rect. 18 1
234 13.88 radiation 10.0 270 < th dose independent rect. 6 1
237 13.88 wind 1.0 43200 > th dose independent rect. 2 2
244 13.88 wind 3.0 1440 < th dose independent rect. 1 6
256 13.88 radiation 40.0 270 > th dose dependent sin 12 NA
258 13.88 atmosphere 1015.0 4320 < th dose dependent rect. 13 1
273 13.88 atmosphere 1015.0 30 < th dose dependent rect. 6 14
276 13.89 atmosphere 995.0 43200 < th dose independent rect. 17 1
277 13.89 radiation 20.0 1440 < th dose independent rect. 9 1
279 13.89 wind 3.0 1440 > th dose independent rect. 4 2
285 13.89 atmosphere 1015.0 14400 > th dose independent rect. 14 3
290 13.89 radiation 30.0 14400 < th dose independent rect. 8 4
296 13.89 radiation 10.0 1440 < th dose independent rect. 7 8
302 13.89 atmosphere 995.0 43200 < th dose dependent rect. 16 1
304 13.89 radiation 1.0 720 < th dose dependent rect. 5 1
305 13.89 radiation 20.0 14400 < th dose dependent rect. 8 1
308 13.89 temperature 20.0 270 > th dose dependent rect. 5 2
324 13.89 atmosphere 1015.0 14400 > th dose dependent rect. 13 6
337 13.89 humidity 50.0 30 > th dose dependent rect. 20 10
342 13.89 atmosphere 995.0 270 > th dose dependent rect. 9 12
348 13.89 precipitation 0.1 1440 > th dose dependent rect. 17 13
354 13.89 radiation 10.0 1440 < th dose dependent rect. 6 16
362 13.89 radiation 10.0 1440 < th dose dependent rect. 6 22
377 13.90 radiation 20.0 1440 < th dose independent rect. 9 4
408 13.90 radiation 10.0 1440 < th dose dependent sin 0 NA
414 13.90 wind 1.0 1440 < th dose dependent rect. 7 2
460 13.90 wind 5.0 4320 > th dose dependent rect. 15 17
469 13.90 radiation 10.0 1440 < th dose dependent rect. 11 22
491 13.91 radiation 10.0 1440 < th dose independent rect. 11 4
518 13.91 wind 7.0 30 < th dose independent rect. 6 14
551 13.91 radiation 10.0 1440 < th dose dependent no NA NA
620 13.91 radiation 10.0 1440 < th dose dependent rect. 13 20
648 13.91 radiation 10.0 1440 < th dose dependent rect. 14 23
661 13.92 precipitation 0.1 4320 > th dose independent rect. 23 2
672 13.92 atmosphere 1015.0 14400 < th dose independent rect. 15 5
750 13.92 precipitation 0.1 1440 > th dose dependent sin 12 NA
760 13.92 precipitation 0.1 4320 > th dose dependent rect. 23 2
789 13.92 radiation 10.0 14400 < th dose dependent rect. 8 6
880 13.93 wind 3.0 1440 < th dose independent rect. 4 2
884 13.93 precipitation 0.1 4320 < th dose independent rect. 23 2
905 13.93 humidity 90.0 1440 < th dose independent rect. 9 7
928 13.93 humidity 90.0 1440 < th dose independent rect. 14 13
964 13.93 radiation 10.0 1440 > th dose dependent rect. 9 1
965 13.93 radiation 1.0 14400 > th dose dependent rect. 13 1
970 13.93 precipitation 0.1 43200 > th dose dependent rect. 17 1
977 13.93 precipitation 0.1 4320 < th dose dependent rect. 23 2
984 13.93 radiation 20.0 1440 < th dose dependent rect. 11 4
989 13.93 radiation 20.0 1440 < th dose dependent rect. 8 5
996 13.93 atmosphere 1010.0 720 < th dose dependent rect. 9 6