BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0245600 Os01g0245600|Os01g0245600
         (284 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0245600  Conserved hypothetical protein                      381   e-106
Os05g0277200  Conserved hypothetical protein                      100   2e-21
Os05g0136100  Zinc finger, FYVE/PHD-type domain containing p...    80   2e-15

>Os01g0245600 Conserved hypothetical protein
          Length = 284

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/284 (70%), Positives = 199/284 (70%)

Query: 1   MANPVVPCPSAAAYGPGGCDGVGCSSSHNVWAHRVRHNGGVYRLCSSCVLLGHRDAFCSV 60
           MANPVVPCPSAAAYGPGGCDGVGCSSSHNVWAHRVRHNGGVYRLCSSCVLLGHRDAFCSV
Sbjct: 1   MANPVVPCPSAAAYGPGGCDGVGCSSSHNVWAHRVRHNGGVYRLCSSCVLLGHRDAFCSV 60

Query: 61  CLDVFPGDAPFQDDFYNPIVSCSCCGVEPVAAAHLACLTDPSYFVCPACAAAAEGRTFTY 120
           CLDVFPGDAPFQDDFYNPIVSCSCCGVEPVAAAHLACLTDPSYFVCPACAAAAEGRTFTY
Sbjct: 61  CLDVFPGDAPFQDDFYNPIVSCSCCGVEPVAAAHLACLTDPSYFVCPACAAAAEGRTFTY 120

Query: 121 APSSGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMVDVACR 180
           APSSGAP                                             DMVDVACR
Sbjct: 121 APSSGAPHALAERVLLVAARLAHESVARAAAAAREQAERLIREAAAARKRARDMVDVACR 180

Query: 181 VLXXXXXXXXXXXXXPPSPVLTKKTTPKNSAANRSSDKPLKINSIQKXXXXXXXXXXXXX 240
           VL             PPSPVLTKKTTPKNSAANRSSDKPLKINSIQK             
Sbjct: 181 VLEAEARDAKEQAAAPPSPVLTKKTTPKNSAANRSSDKPLKINSIQKPALAFAAAAAAAA 240

Query: 241 XXXXXXXXXXXXXXGERKPMKQGRASANRGAKDDQRTLFGAFQP 284
                         GERKPMKQGRASANRGAKDDQRTLFGAFQP
Sbjct: 241 AAASSTPLSTPSPAGERKPMKQGRASANRGAKDDQRTLFGAFQP 284



>Os05g0277200 Conserved hypothetical protein
          Length = 284

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 79/142 (55%), Gaps = 21/142 (14%)

Query: 1   MANPVVPCPSAAAYGPGGCDGVGCSSSHNVW-AHRVRHNGGVYRLCSSCVLLGHRDAFCS 59
           M  P  P PSA +  P GC G  C+S  + W  H VRH+G   RLCSSCVLL H  AFCS
Sbjct: 1   MTPPFRPSPSAGSI-PRGCGGDRCASGRDAWPLHHVRHDGVFCRLCSSCVLLYHPAAFCS 59

Query: 60  VCLDVFP---------GDAPFQDDFYNPIVS-------CSCCGVEPVAAAHLACLTDPSY 103
            CL +FP              Q+   +PI+S       CS CG+     AH +C+ D + 
Sbjct: 60  ACLLLFPPASASASASAATAVQEPRLDPILSPPGPTAACSSCGL---FVAHHSCVPDSAS 116

Query: 104 FVCPACAAAAEGRTFTYAPSSG 125
           FVCP+CAAAAEG+ F+Y P+ G
Sbjct: 117 FVCPSCAAAAEGKPFSYTPAGG 138



>Os05g0136100 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 302

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 15  GPGGCDGVGCSSSHNVW-AHRVRHNGGVYRLCSSCVLLGHRDAFCSVCLDVFPGDAPFQD 73
           G  GC G  C S  + W  H VRH G   RLCSSCVLL H  AFCS CL + P  A    
Sbjct: 15  GHRGCGGDRCGSGRDAWPLHNVRHQGVFCRLCSSCVLLYHPAAFCSACLLLLPPAAAPVA 74

Query: 74  DFYNPIVSCSCCGVEPVAAAHLACLTDPSYFVCPACAAAAEGRTFTYAPSSGA 126
               P+ +CS CG   +  AH +C+ DP  FVCP CA AA GR ++Y P++ A
Sbjct: 75  APPGPVSACSSCG---LFVAHHSCVPDPVSFVCPTCADAAVGRVYSYTPAAAA 124



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,612,757
Number of extensions: 354547
Number of successful extensions: 861
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 5
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)