Os05g0277200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0277200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.62 | 0.256 | 9.89 | 1.42 | 0.965 | -0.901 | -0.377 | 1.47 | 0.335 | 17.5 | 20.56 | 1208 | -- | -- |
| 33.05 | 0.268 | 9.93 | 1.11 | 1 | -0.739 | -0.391 | -- | 0.271 | 17.2 | 20.27 | 6921 | -- | -- |
| 29.86 | 0.254 | 9.87 | 1.47 | 0.971 | -0.902 | -- | 1.69 | 0.353 | 17.4 | 21.1 | 1210 | -- | -- |
| 33.29 | 0.269 | 9.91 | 1.25 | 0.978 | -0.906 | -- | -- | 0.344 | 17.2 | 16.64 | 8414 | -- | -- |
| 76.88 | 0.408 | 9.85 | 1.6 | -- | -1.02 | -- | 2.05 | 0.371 | -- | 22.74 | 1272 | -- | -- |
| 50.42 | 0.333 | 9.98 | 0.723 | 1.03 | -- | -0.3 | -- | 0.0369 | 17.1 | -- | -- | -- | -- |
| 50.65 | 0.333 | 9.98 | 0.722 | 1.02 | -- | -- | -- | 0.0355 | 17 | -- | -- | -- | -- |
| 81.4 | 0.42 | 9.93 | 0.998 | -- | -0.815 | -- | -- | 0.171 | -- | 22.29 | 2712 | -- | -- |
| 55.06 | 0.346 | 9.98 | -- | 0.97 | -0.529 | -- | -- | 0.0458 | 17.4 | 22 | 1158 | -- | -- |
| 105.74 | 0.48 | 9.97 | 0.685 | -- | -- | -- | -- | 0.00931 | -- | -- | -- | -- | -- |
| 64.4 | 0.375 | 10 | -- | 1.01 | -- | -- | -- | -0.045 | 17.1 | -- | -- | -- | -- |
| 102.66 | 0.472 | 9.96 | -- | -- | -0.636 | -- | -- | 0.0451 | -- | 22.5 | 1254 | -- | -- |
| 118.13 | 0.507 | 9.98 | -- | -- | -- | -- | -- | -0.0667 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 4 | 30.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 6 | 30.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 19 | 30.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 31 | 30.23 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 81 | 30.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 104 | 30.31 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 399 | 30.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 438 | 30.93 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 540 | 31.00 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 549 | 31.02 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 559 | 31.02 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 611 | 31.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 909 | 31.34 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 954 | 31.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |