BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0242300 Os01g0242300|AK070082
         (170 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0242300  Optic atrophy 3 family protein                      303   4e-83
Os02g0312500  Optic atrophy 3 family protein                      193   4e-50
Os01g0753150  Optic atrophy 3 family protein                      151   2e-37

>Os01g0242300 Optic atrophy 3 family protein
          Length = 170

 Score =  303 bits (776), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/170 (90%), Positives = 153/170 (90%)

Query: 1   MSLPVAKLGTLALRTLSKPIASRLKNQAAVHPKFRNFIICIAQINHRVTTRIQRRIYGHA 60
           MSLPVAKLGTLALRTLSKPIASRLKNQAAVHPKFRNFIICIAQINHRVTTRIQRRIYGHA
Sbjct: 1   MSLPVAKLGTLALRTLSKPIASRLKNQAAVHPKFRNFIICIAQINHRVTTRIQRRIYGHA 60

Query: 61  TDVEITPLNEEKAVQAATDLIGEGFIFSVAVAALIFEVQRNARSEARKEEAXXXXXXXXX 120
           TDVEITPLNEEKAVQAATDLIGEGFIFSVAVAALIFEVQRNARSEARKEEA         
Sbjct: 61  TDVEITPLNEEKAVQAATDLIGEGFIFSVAVAALIFEVQRNARSEARKEEARKQELEELK 120

Query: 121 XXXXXXXXDLEDLKLRLAEIEHLAKGRGLSGILNFKGVHGAESSKAATPA 170
                   DLEDLKLRLAEIEHLAKGRGLSGILNFKGVHGAESSKAATPA
Sbjct: 121 QREESLSKDLEDLKLRLAEIEHLAKGRGLSGILNFKGVHGAESSKAATPA 170



>Os02g0312500 Optic atrophy 3 family protein
          Length = 166

 Score =  193 bits (491), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 122/167 (73%), Gaps = 1/167 (0%)

Query: 1   MSLPVAKLGTLALRTLSKPIASRLKNQAAVHPKFRNFIICIAQINHRVTTRIQRRIYGHA 60
           M LP+AKLGTLAL+T+SKPIA RLK +A+ HP+FR  II +AQ NHRV+T IQRRIYGH+
Sbjct: 1   MILPLAKLGTLALKTMSKPIAIRLKTEASRHPQFRQLIINLAQTNHRVSTNIQRRIYGHS 60

Query: 61  TDVEITPLNEEKAVQAATDLIGEGFIFSVAVAALIFEVQRNARSEARKEEAXXXXXXXXX 120
           T VEI PLNEEKAVQAA DLIGE F+FSVA AA+IFEVQR+ARSEARKEEA         
Sbjct: 61  TKVEIRPLNEEKAVQAAADLIGELFVFSVAGAAVIFEVQRSARSEARKEEARRNEVEALR 120

Query: 121 XXXXXXXXDLEDLKLRLAEIEHLAKGRGLSGILNFKGVHGAESSKAA 167
                   ++E +K +L EIE  A  RGLSG+L F+     + +KA+
Sbjct: 121 QKEDQLAREIEIVKQKLGEIERQANSRGLSGVL-FRSSSAPDQTKAS 166



>Os01g0753150 Optic atrophy 3 family protein
          Length = 198

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 110/182 (60%), Gaps = 21/182 (11%)

Query: 1   MSLPVAKLGTLALRTLSKPIASRLKNQAAVHPKFRNFIICIAQINHRVTTRIQRRIYGHA 60
           M LP+ KLG+LA RTLSKPIA+RLK+ A +HPKFR FII +AQ+NHR TT +QRR+YG A
Sbjct: 1   MVLPLVKLGSLAFRTLSKPIAARLKHNAGIHPKFRGFIIGLAQVNHRFTTNMQRRLYGRA 60

Query: 61  TDVEITPLNEEKAVQAATDLI-GEGFIFS------------VAVAALIFEVQRNARSEAR 107
           TD+ I PLNEEKA+QAA DL+  E + F             VA  A+I+EVQR+AR+EAR
Sbjct: 61  TDIHIRPLNEEKAIQAAADLLEPENWFFQNSYFSLTSYAREVAGTAIIYEVQRSARAEAR 120

Query: 108 KEEAXXXXXXXXXXXXXXXXXDLEDLKLRLAEIEHLAKGRGLSGILNFKGVHGAESSKAA 167
           KEE                  +++ +K R++EIE     R        + +  +  S  A
Sbjct: 121 KEEIRKQEIEARKQRIEELASEVQMMKKRISEIERQQDER--------RALPNSRGSTTA 172

Query: 168 TP 169
           TP
Sbjct: 173 TP 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,244,746
Number of extensions: 127622
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 3
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)