BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0240900 Os01g0240900|Os01g0240900
         (56 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0240900  Peptidase C1A, papain family protein                 94   3e-20
Os07g0480900  Similar to Cysteine protease (Fragment)              75   1e-14

>Os01g0240900 Peptidase C1A, papain family protein
          Length = 56

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MQGTCASCWAFSTTGAVEGDNFLASGNLRNLLNLSEQQLVNCDHT 45
          MQGTCASCWAFSTTGAVEGDNFLASGNLRNLLNLSEQQLVNCDHT
Sbjct: 1  MQGTCASCWAFSTTGAVEGDNFLASGNLRNLLNLSEQQLVNCDHT 45



>Os07g0480900 Similar to Cysteine protease (Fragment)
          Length = 376

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 39/45 (86%), Gaps = 3/45 (6%)

Query: 1   MQGTCASCWAFSTTGAVEGDNFLASGNLRNLLNLSEQQLVNCDHT 45
           MQG C SCWAFSTTGAVEG NFLA+G   NLL+LSEQQLV+CDHT
Sbjct: 155 MQGACGSCWAFSTTGAVEGANFLATG---NLLDLSEQQLVDCDHT 196



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,413,714
Number of extensions: 31859
Number of successful extensions: 164
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 56
Length of database: 17,035,801
Length adjustment: 29
Effective length of query: 27
Effective length of database: 15,521,595
Effective search space: 419083065
Effective search space used: 419083065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)