Os07g0480900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine protease (Fragment).
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Os07g0480900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine protease (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.24 | 0.746 | 4.92 | -3.11 | 3.44 | -3.68 | -3.49 | 2.03 | -0.681 | 3.75 | 25.24 | 269 | 5.16 | -- |
| 255.46 | 0.744 | 4.9 | -2.88 | 3.29 | -3.66 | -2.75 | -- | -0.598 | 3.78 | 24.94 | 287 | 5.38 | -- |
| 270.83 | 0.766 | 4.86 | -2.61 | 3.12 | -3.75 | -- | -1.65 | -0.489 | 3.64 | 24.54 | 260 | 5.5 | -- |
| 272.84 | 0.769 | 4.88 | -2.79 | 3.37 | -3.62 | -- | -- | -0.573 | 3.74 | 25.29 | 283 | 5.41 | -- |
| 548.18 | 1.09 | 5.2 | -4.89 | -- | -3.67 | -- | 2.82 | -1.11 | -- | 42.93 | 1325 | 4.03 | -- |
| 397.36 | 0.935 | 4.77 | -2.25 | 2.53 | -- | -1.7 | -- | -0.0512 | 4.05 | -- | -- | -- | -- |
| 405.59 | 0.943 | 4.76 | -2.23 | 2.51 | -- | -- | -- | -0.0417 | 4.01 | -- | -- | -- | -- |
| 328.02 | 0.844 | 4.91 | -3.05 | -- | -4.45 | -- | -- | -0.578 | -- | 87.81 | 1297 | 0.602 | -- |
| 466.25 | 1.01 | 4.79 | -- | 3.14 | -2.79 | -- | -- | -0.183 | 3.78 | 25.79 | 306 | 6.07 | -- |
| 750.16 | 1.28 | 4.77 | -2.13 | -- | -- | -- | -- | 0.0254 | -- | -- | -- | -- | -- |
| 537.21 | 1.08 | 4.71 | -- | 2.47 | -- | -- | -- | 0.207 | 4.03 | -- | -- | -- | -- |
| 526.36 | 1.07 | 4.75 | -- | -- | -3.29 | -- | -- | 0.0949 | -- | 104.1 | 1205 | 0.0256 | -- |
| 870.07 | 1.38 | 4.72 | -- | -- | -- | -- | -- | 0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.50 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 21 | 252.64 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 26 | 253.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 61 | 257.39 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 68 | 257.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 71 | 258.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 99 | 260.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 242 | 268.71 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 374 | 274.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 475 | 277.51 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 506 | 278.68 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 5 |
| 551 | 279.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 577 | 280.21 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 8 |
| 671 | 282.83 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 762 | 285.18 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 777 | 285.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 897 | 287.88 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 936 | 288.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 958 | 288.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 965 | 289.00 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |