BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0229500 Os01g0229500|AK108111
         (167 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0229500  Phenylacetic acid degradation-related protein ...   269   7e-73
Os01g0229600  Conserved hypothetical protein                       71   4e-13

>Os01g0229500 Phenylacetic acid degradation-related protein domain containing
           protein
          Length = 167

 Score =  269 bits (687), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 134/148 (90%), Positives = 134/148 (90%)

Query: 20  RRWLEEAGVAFDGSDRRAFNALPLAGARVSLAEAGRAVCSLRVTAELTDAEGNWHPGXXX 79
           RRWLEEAGVAFDGSDRRAFNALPLAGARVSLAEAGRAVCSLRVTAELTDAEGNWHPG   
Sbjct: 20  RRWLEEAGVAFDGSDRRAFNALPLAGARVSLAEAGRAVCSLRVTAELTDAEGNWHPGAIA 79

Query: 80  XXXXXXXXXXXMSVEGIIKVSVHYDISYFSPAKLHEEVELDGRVVEQKGKMTAVTVEIRK 139
                      MSVEGIIKVSVHYDISYFSPAKLHEEVELDGRVVEQKGKMTAVTVEIRK
Sbjct: 80  AAADDVCAAAIMSVEGIIKVSVHYDISYFSPAKLHEEVELDGRVVEQKGKMTAVTVEIRK 139

Query: 140 KDSGELVAIGRQWMSTTRPKKDQASSKL 167
           KDSGELVAIGRQWMSTTRPKKDQASSKL
Sbjct: 140 KDSGELVAIGRQWMSTTRPKKDQASSKL 167



>Os01g0229600 Conserved hypothetical protein
          Length = 60

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)

Query: 112 KLHEEVELDGRVVEQKGKMTAVTVEIRKKDSGELVAIGRQWMSTT--RPKKD-QASSKL 167
           +  EEVE+DGRV  +KGK+TA  VE+R+K SGELVAIGRQWM++T  RP+K+ ++ SKL
Sbjct: 2   RAQEEVEMDGRVAHRKGKLTAAVVEVRRKASGELVAIGRQWMTSTRARPEKNGESRSKL 60



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,367,037
Number of extensions: 138161
Number of successful extensions: 333
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)