Os01g0229600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0229600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.79 | 0.679 | 12.2 | -1.18 | 1.93 | 2.27 | -0.898 | -3.75 | -0.564 | 15 | 25.21 | 1355 | -- | -- |
| 218.1 | 0.688 | 12 | -0.0388 | 1.99 | 2.16 | -0.508 | -- | -0.228 | 14.9 | 25.5 | 1307 | -- | -- |
| 207.07 | 0.67 | 12.2 | -1.15 | 1.95 | 2.34 | -- | -3.58 | -0.568 | 14.9 | 25.6 | 1351 | -- | -- |
| 218.99 | 0.689 | 12.1 | -0.0476 | 1.98 | 2.16 | -- | -- | -0.227 | 14.9 | 25.5 | 1307 | -- | -- |
| 317.63 | 0.835 | 12 | 0.172 | -- | 1.33 | -- | -0.312 | 0.0656 | -- | 25.8 | 1687 | -- | -- |
| 344.95 | 0.871 | 11.9 | 0.61 | 1.64 | -- | -0.674 | -- | 0.508 | 15 | -- | -- | -- | -- |
| 346.46 | 0.872 | 11.9 | 0.595 | 1.64 | -- | -- | -- | 0.504 | 15 | -- | -- | -- | -- |
| 318.03 | 0.834 | 12 | 0.243 | -- | 1.32 | -- | -- | 0.0858 | -- | 25.8 | 1687 | -- | -- |
| 219.05 | 0.689 | 12.1 | -- | 1.98 | 2.15 | -- | -- | -0.222 | 14.9 | 25.5 | 1307 | -- | -- |
| 500.18 | 1.05 | 11.9 | 0.525 | -- | -- | -- | -- | 0.462 | -- | -- | -- | -- | -- |
| 355.8 | 0.882 | 11.9 | -- | 1.63 | -- | -- | -- | 0.438 | 15 | -- | -- | -- | -- |
| 319.57 | 0.835 | 12 | -- | -- | 1.34 | -- | -- | 0.0555 | -- | 25.8 | 1687 | -- | -- |
| 507.46 | 1.05 | 11.9 | -- | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 211.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 10 | 212.03 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 15 | 212.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 20 | 212.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 25 | 212.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 38 | 213.00 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 52 | 213.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 67 | 213.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 79 | 214.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 80 | 214.04 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 83 | 214.05 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 99 | 214.36 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 131 | 215.02 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 133 | 215.08 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 138 | 215.15 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 151 | 215.39 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 186 | 216.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 187 | 216.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 206 | 216.33 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 211 | 216.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 239 | 216.60 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 250 | 216.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 329 | 217.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 341 | 217.71 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 377 | 218.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 404 | 218.76 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 424 | 218.96 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 429 | 219.01 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 447 | 219.15 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 461 | 219.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 477 | 219.56 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 484 | 219.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 496 | 219.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 498 | 219.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 506 | 220.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 512 | 220.17 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 523 | 220.30 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 534 | 220.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 548 | 220.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 550 | 220.52 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 556 | 220.55 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 562 | 220.61 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 582 | 220.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 587 | 220.81 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 627 | 221.10 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 664 | 221.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 686 | 221.51 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 701 | 221.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 714 | 221.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 732 | 221.70 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 734 | 221.72 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 768 | 221.90 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 832 | 222.18 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 847 | 222.24 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 885 | 222.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 905 | 222.54 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 912 | 222.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 16 |
| 931 | 222.69 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 945 | 222.76 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 977 | 222.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |