BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0229000 Os01g0229000|AJ495793
         (235 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0229000  Conserved hypothetical protein                      461   e-130
Os12g0238000  Myb, DNA-binding domain containing protein          341   3e-94
Os09g0510800                                                      136   1e-32
Os06g0520900                                                       79   3e-15

>Os01g0229000 Conserved hypothetical protein
          Length = 235

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/235 (94%), Positives = 223/235 (94%)

Query: 1   MDEQTTGERSSATNVATNDDLSGNLQPAGILIEHSGDDPISPDYGKNTMNQKLNTNVKSL 60
           MDEQTTGERSSATNVATNDDLSGNLQPAGILIEHSGDDPISPDYGKNTMNQKLNTNVKSL
Sbjct: 1   MDEQTTGERSSATNVATNDDLSGNLQPAGILIEHSGDDPISPDYGKNTMNQKLNTNVKSL 60

Query: 61  SVCKEGVCAKSKPTELIVEKSSPCINVDYEYVNILADTPGIKRGLESPSAWKSPWFVDMH 120
           SVCKEGVCAKSKPTELIVEKSSPCINVDYEYVNILADTPGIKRGLESPSAWKSPWFVDMH
Sbjct: 61  SVCKEGVCAKSKPTELIVEKSSPCINVDYEYVNILADTPGIKRGLESPSAWKSPWFVDMH 120

Query: 121 FQGSYFTSPADSYDALGLMKQINVQTXXXXXXXXXXXXSGGQCDNISSDKENTGNPDAKK 180
           FQGSYFTSPADSYDALGLMKQINVQT            SGGQCDNISSDKENTGNPDAKK
Sbjct: 121 FQGSYFTSPADSYDALGLMKQINVQTAAALVEAREVLASGGQCDNISSDKENTGNPDAKK 180

Query: 181 EPGTTKLQTKIMAEGRVLDFECTTPERSSDKNAGSNLGRYLSSPIPSSHLLKSFR 235
           EPGTTKLQTKIMAEGRVLDFECTTPERSSDKNAGSNLGRYLSSPIPSSHLLKSFR
Sbjct: 181 EPGTTKLQTKIMAEGRVLDFECTTPERSSDKNAGSNLGRYLSSPIPSSHLLKSFR 235



>Os12g0238000 Myb, DNA-binding domain containing protein
          Length = 999

 Score =  341 bits (874), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 184/239 (76%), Positives = 198/239 (82%), Gaps = 5/239 (2%)

Query: 1   MDEQTTGERSSATNVATN-DDLSGNLQPAGILIEHSGDDPISPDYGKNTMNQKLNTNVKS 59
           +DEQ  GER +ATN+ T  DDL GNLQPAGILIEH+GDD +SPDYGKNTM QK NTN++S
Sbjct: 762 IDEQARGERRTATNITTTYDDLPGNLQPAGILIEHNGDDLVSPDYGKNTMKQKQNTNMES 821

Query: 60  LSVCKEGVCAKSKPTELIVEKSSPCINVDYEYVNILADTPGIKRGLESPSAWKSPWFVDM 119
           LSVCKEGV AK KP ELIVEKSS CINVDYEYVNILADTPGIKRGLESPSAWKSPWFVDM
Sbjct: 822 LSVCKEGVSAK-KPAELIVEKSSACINVDYEYVNILADTPGIKRGLESPSAWKSPWFVDM 880

Query: 120 HFQGSYFTSPAD-SYDALGLMKQINVQTXXXXXXXXXXXXSGGQCDNISSDKENTGNPDA 178
            FQGSYF SPA+ SYDALGL+KQINVQT            SGGQ +NI+SDKEN  NPDA
Sbjct: 881 QFQGSYFVSPANGSYDALGLVKQINVQTAAALAEAREVLASGGQSENINSDKENLENPDA 940

Query: 179 KKEPG-TTKLQTKIMAEGRVLDF-ECTTPERSSDKNAGSNLGRYLSSPIPSSHLLKSFR 235
           KKEPG TTKLQ KI  EG++LDF EC TP RSSDK AGS+LGR LSSPIPSSHLLKSFR
Sbjct: 941 KKEPGATTKLQAKIKTEGKILDFNECATPIRSSDKKAGSSLGRSLSSPIPSSHLLKSFR 999



>Os09g0510800 
          Length = 1584

 Score =  136 bits (342), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/102 (67%), Positives = 78/102 (76%), Gaps = 2/102 (1%)

Query: 92  VNILADTPGIKRGLESPSAWKSPWFVDMHFQGSYFTSPAD-SYDALGLMKQINVQTXXXX 150
           ++ LADTP IKRGLESPSAWKSPWFVDM FQGSYF SPAD +Y+ALG +KQINVQT    
Sbjct: 23  ISRLADTPCIKRGLESPSAWKSPWFVDMQFQGSYFVSPADRTYNALGFVKQINVQTAAAL 82

Query: 151 XXXXXXXXSGGQCDNISSDKENTGNPDAKKEPG-TTKLQTKI 191
                   SGGQ +NI+S KEN  +P+AKKEPG TTKLQ KI
Sbjct: 83  AEAREVLVSGGQSENINSGKENLESPNAKKEPGATTKLQAKI 124



>Os06g0520900 
          Length = 185

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 50/73 (68%), Gaps = 4/73 (5%)

Query: 123 GSYFTSPAD-SYDALGLMKQINVQTXXXXXXXXX--XXXSGGQCDNISSDKENTGNPDAK 179
           GSYF SPAD +YDALGL+KQINVQT              SGGQ +NI+ DKEN  +P+AK
Sbjct: 109 GSYFVSPADRTYDALGLVKQINVQTAAALAEAREVLAVASGGQSENINYDKENLESPNAK 168

Query: 180 KEPG-TTKLQTKI 191
           KEP  TTKLQ KI
Sbjct: 169 KEPRTTTKLQAKI 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,264,736
Number of extensions: 333240
Number of successful extensions: 493
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 4
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 154 (63.9 bits)