Os01g0229000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0229000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.32 | 0.662 | 2.76 | 0.237 | 0.0653 | 0.702 | 0.557 | 0.951 | 0.149 | 15.4 | 93.59 | 630 | -- | -- |
| 199.79 | 0.658 | 2.77 | 0.329 | 0.0671 | 0.679 | 0.767 | -- | 0.157 | 14.6 | 93.76 | 641 | -- | -- |
| 199.13 | 0.657 | 2.76 | 0.256 | 0.0688 | 0.761 | -- | 1.11 | 0.152 | 16.4 | 93.8 | 643 | -- | -- |
| 201.31 | 0.661 | 2.76 | 0.329 | 0.0625 | 0.716 | -- | -- | 0.162 | 16.9 | 93.76 | 648 | -- | -- |
| 199.25 | 0.657 | 2.76 | 0.249 | -- | 0.796 | -- | 1.14 | 0.14 | -- | 93.88 | 693 | -- | -- |
| 205.61 | 0.672 | 2.78 | 0.306 | 0.12 | -- | 0.656 | -- | 0.0767 | 11.5 | -- | -- | -- | -- |
| 207.42 | 0.674 | 2.78 | 0.332 | 0.122 | -- | -- | -- | 0.0785 | 10.5 | -- | -- | -- | -- |
| 201.43 | 0.661 | 2.76 | 0.334 | -- | 0.762 | -- | -- | 0.155 | -- | 93.89 | 691 | -- | -- |
| 203.68 | 0.665 | 2.77 | -- | 0.0915 | 0.844 | -- | -- | 0.125 | 16.9 | 93.94 | 501 | -- | -- |
| 208.33 | 0.674 | 2.78 | 0.33 | -- | -- | -- | -- | 0.0781 | -- | -- | -- | -- | -- |
| 210.33 | 0.678 | 2.79 | -- | 0.12 | -- | -- | -- | 0.0416 | 10.3 | -- | -- | -- | -- |
| 204.06 | 0.665 | 2.77 | -- | -- | 0.791 | -- | -- | 0.114 | -- | 94 | 501 | -- | -- |
| 211.21 | 0.678 | 2.79 | -- | -- | -- | -- | -- | 0.0415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.24 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 2 | 1 |
| 2 | 195.24 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 195.69 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 4 | 195.71 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 9 | 196.09 | humidity | 90.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 23 | 196.28 | radiation | 30.0 | 30 | > th | dose independent | rect. | 11 | 2 |
| 32 | 196.50 | wind | 9.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 45 | 196.50 | wind | 9.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 74 | 197.17 | wind | 3.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 76 | 197.20 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 11 | 2 |
| 103 | 197.93 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 107 | 198.01 | wind | 3.0 | 30 | < th | dose dependent | rect. | 6 | 7 |
| 114 | 198.11 | wind | 3.0 | 10 | < th | dose independent | rect. | 11 | 2 |
| 115 | 198.12 | wind | 3.0 | 90 | < th | dose independent | rect. | 11 | 1 |
| 131 | 198.26 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 152 | 198.53 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 158 | 198.73 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 159 | 198.73 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 162 | 198.76 | wind | 3.0 | 30 | < th | dose independent | rect. | 6 | 7 |
| 163 | 198.76 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 204 | 199.17 | wind | 1.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 205 | 199.18 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 209 | 199.19 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 218 | 199.27 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 219 | 199.27 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 222 | 199.27 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 227 | 199.29 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 231 | 199.31 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 246 | 199.34 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 249 | 199.37 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 251 | 199.39 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 252 | 199.40 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 257 | 199.42 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 261 | 199.43 | temperature | 25.0 | 10 | < th | dose independent | rect. | 18 | 18 |
| 262 | 199.43 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 263 | 199.44 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 282 | 199.47 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 316 | 199.52 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 322 | 199.54 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 340 | 199.57 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 361 | 199.59 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 405 | 199.64 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 407 | 199.64 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 428 | 199.65 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 429 | 199.65 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 436 | 199.66 | radiation | 10.0 | 30 | > th | dose independent | rect. | 13 | 22 |
| 456 | 199.68 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 476 | 199.69 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 478 | 199.69 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 479 | 199.69 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 480 | 199.69 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 482 | 199.70 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 489 | 199.70 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 493 | 199.70 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 12 | 21 |
| 500 | 199.70 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 501 | 199.70 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 502 | 199.70 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 24 | 8 |
| 547 | 199.73 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 564 | 199.73 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 566 | 199.73 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 585 | 199.74 | radiation | 30.0 | 30 | < th | dose independent | rect. | 8 | 11 |
| 590 | 199.74 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 604 | 199.74 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 609 | 199.74 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 646 | 199.75 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 663 | 199.76 | atmosphere | 1005.0 | 43200 | < th | dose independent | no | NA | NA |
| 666 | 199.76 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 697 | 199.76 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 765 | 199.78 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 816 | 199.79 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 11 |
| 819 | 199.79 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 864 | 199.80 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 887 | 199.81 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 899 | 199.81 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 11 |