BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0229000 Os01g0229000|AJ495793
         (235 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11510.1  | chr5:3680452-3684684 FORWARD LENGTH=962             52   2e-07

>AT5G11510.1 | chr5:3680452-3684684 FORWARD LENGTH=962
          Length = 961

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 27/137 (19%)

Query: 90  EYVNILADTPGIKRGLESPSAWKSPWFVD-------------MHFQGSYFTSPADSYDAL 136
           E  +I   TP  +RGLESPSAWKSP++++             +   G  F+    SY+++
Sbjct: 827 ENFSIFCGTP-FRRGLESPSAWKSPFYINSLLPSPRFDTDLTIEDMGYIFSPGERSYESI 885

Query: 137 GLMKQINVQTXXXXXXXXXXXXSGGQCDNISSDKENTGNPDAKKEPGTTKLQTK-IMAEG 195
           G+M QIN  T            S      IS       N DA+++    K     ++AE 
Sbjct: 886 GVMTQINEHTSAFAAFADAMEVS------IS-----PTNDDARQKKELDKENNDPLLAER 934

Query: 196 RVLDF-ECTTPERSSDK 211
           RVLDF +C +P +++++
Sbjct: 935 RVLDFNDCESPIKATEE 951



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,384,195
Number of extensions: 225877
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 2
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)