BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0227100 Os01g0227100|AK068523
         (504 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0227100  Glucose/ribitol dehydrogenase family protein        990   0.0  
AK110225                                                           70   3e-12
Os07g0664000  Glucose/ribitol dehydrogenase family protein         66   7e-11

>Os01g0227100 Glucose/ribitol dehydrogenase family protein
          Length = 504

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/504 (96%), Positives = 485/504 (96%)

Query: 1   MAAAAVVHLSVHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGXXXXXXXXXXXXXXX 60
           MAAAAVVHLSVHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGG               
Sbjct: 1   MAAAAVVHLSVHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEA 60

Query: 61  XXXXKGPLYKLKAAIQGLAGSRSAAAEAYGGEYQRAVEKAEEIFFSVATQVGRYVITMMS 120
               KGPLYKLKAAIQGLAGSRSAAAEAYGGEYQRAVEKAEEIFFSVATQVGRYVITMMS
Sbjct: 61  RRRRKGPLYKLKAAIQGLAGSRSAAAEAYGGEYQRAVEKAEEIFFSVATQVGRYVITMMS 120

Query: 121 SGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTR 180
           SGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTR
Sbjct: 121 SGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTR 180

Query: 181 GLGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVG 240
           GLGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVG
Sbjct: 181 GLGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVG 240

Query: 241 TSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGS 300
           TSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGS
Sbjct: 241 TSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGS 300

Query: 301 LLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRS 360
           LLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRS
Sbjct: 301 LLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRS 360

Query: 361 KVGVHTASPGMVLTDLLLSGSSLRNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYL 420
           KVGVHTASPGMVLTDLLLSGSSLRNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYL
Sbjct: 361 KVGVHTASPGMVLTDLLLSGSSLRNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYL 420

Query: 421 TPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWV 480
           TPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWV
Sbjct: 421 TPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWV 480

Query: 481 SVFSLSVVCAFIILSSSGGPLPGT 504
           SVFSLSVVCAFIILSSSGGPLPGT
Sbjct: 481 SVFSLSVVCAFIILSSSGGPLPGT 504



>AK110225 
          Length = 900

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 127/313 (40%), Gaps = 59/313 (18%)

Query: 173 VVITGSTRGLGKALAREFLLSGDRVVIASR-SPESVLQTINELEENIQEGLSVAKKKQRE 231
           V++TG+  GLG+A A  F   G +VV+    +P++V+Q I +L                 
Sbjct: 317 VLVTGAGGGLGRAYALLFAKLGAKVVVNDLVNPDAVVQEIQKL----------------- 359

Query: 232 ILLHAKVVGTSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQ 291
                + VG   +V   E V K    A D  G ID+ +NNAG  +  +   N +DE    
Sbjct: 360 ---GGQAVGNKANVVDGEAVIKT---AIDTYGRIDVLVNNAGILRD-KAFANMTDEQWDL 412

Query: 292 IVSTNLVGSLLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQA 351
           I   +L G+  C++ A      +QK G V N     SG       A Y S KCG+  F  
Sbjct: 413 IHQVHLFGTYACSKAAWPYFL-KQKYGRVLNTTST-SGIYGNFGQANYASAKCGILGFSR 470

Query: 352 SLLKESRRSKVGVHTASPGMVLTDLLLSGSSLRNKQMFNLICELPETVARTLVPR----M 407
           SL  E +++ + V+T +P         +G+ +    M       PE + + L P     +
Sbjct: 471 SLALEGKKNNIYVNTIAPN--------AGTGMTRTIM-------PEEMVQALKPDYVAPL 515

Query: 408 RVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAV-----YAAEA-----DRIRN 457
            V+  S KA     P   L      WV   RW    G           EA     +RI N
Sbjct: 516 VVLLCSDKAPE---PTSGLYETGQGWVAATRWQRTGGHGFPVDVKLTPEAVLEKWERINN 572

Query: 458 WAESRARFSFTDA 470
           + + RA   F +A
Sbjct: 573 FDDGRADNPFDNA 585



>Os07g0664000 Glucose/ribitol dehydrogenase family protein
          Length = 301

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 123/300 (41%), Gaps = 37/300 (12%)

Query: 145 SWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVIASRSP 204
           +W  G+++     A+S    H +   +  VITG   G+GKA A EF+ +G +V+IA    
Sbjct: 20  TWTAGLVVNGFSTASS---SHQRLAGKVAVITGGASGIGKATATEFIKNGAKVIIA---- 72

Query: 205 ESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVKKLVNFAKDELGS 264
                   ++++++  G SVA +      L      T CDV     V   V  A    G 
Sbjct: 73  --------DIQDDL--GHSVAAE------LGPDAAYTRCDVADEAQVAAAVGLAVKRHGR 116

Query: 265 IDIWINNAGTNKGFRPLVNFSDEDI---SQIVSTNLVGSLLCTREAMNVMQHQQKGGHVF 321
           +D++ NNAG   G  P  + +  D+    ++++ N   +L   + A   M  +  G  + 
Sbjct: 117 LDVFHNNAGI-AGALPQDDMAAVDLGDFDRVMAVNARSTLAAVKHAARAMAPRCSGCVLC 175

Query: 322 NMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRSKVGVHTASPGMVLTDLLLSGS 381
              GAG      P   VY  +K  +     +  +   R  + V+  SPG   T LLL   
Sbjct: 176 TSSGAGV--IPVPAVPVYSVSKATVIAIVRAAAEPMARHGLRVNAISPGATRTPLLL--- 230

Query: 382 SLRNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFD 441
                +   L+ E+  +++  L   +    G G A+  L P  I  A V       R+ +
Sbjct: 231 -----RQIPLLSEMSPSLSDGLKTTVEKEVGEGGAVVLLAPEDIARAAVYLASDEARYVN 285



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,029,026
Number of extensions: 696715
Number of successful extensions: 2087
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2111
Number of HSP's successfully gapped: 11
Length of query: 504
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 399
Effective length of database: 11,553,331
Effective search space: 4609779069
Effective search space used: 4609779069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)