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Os01g0227100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0177) R2 : 0.802
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.85 (0.0441) R2dE : 0.773 R2E : 0.756
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.334 (0.0373) R2dN8 : 0.0453 R2N8 : 0.0282
σ : 0.333
deviance : 51.07
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C
peak time of C : --
E
wheather : temperature
threshold : 14.5
memory length : 428
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.3
open length of G : 18.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.03 0.27 13 -0.499 1.06 -1.3 -0.514 -0.0408 -0.351 17.7 14.82 268 17 19.9
32.86 0.267 13 -0.51 1.06 -1.24 -0.503 -- -0.352 17.7 14.71 263 17 19.9
33.14 0.268 13 -0.502 1.08 -1.23 -- 0.392 -0.35 17.7 14.8 260 17 19.9
33.44 0.269 13 -0.509 1.05 -1.26 -- -- -0.358 17.7 14.7 262 17 19.9
53.83 0.342 13 -0.635 -- -1.66 -- 0.371 -0.46 -- 12.76 410 15.7 20.4
61.15 0.367 13 -0.535 1.86 -- -0.488 -- -0.322 17.7 -- -- -- --
61.74 0.368 13 -0.533 1.86 -- -- -- -0.324 17.7 -- -- -- --
48.32 0.324 13 -0.591 -- -1.83 -- -- -0.427 -- 12.71 425 16.2 19
40.16 0.295 13 -- 1.08 -1.29 -- -- -0.315 17.6 14.82 265 17 19.8
240.67 0.725 13 -0.592 -- -- -- -- -0.368 -- -- -- -- --
69.22 0.389 13 -- 1.87 -- -- -- -0.265 17.7 -- -- -- --
51.07 0.333 13 -- -- -1.85 -- -- -0.334 -- 14.5 428 16.3 18.8
249.91 0.738 13 -- -- -- -- -- -0.303 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.47 temperature 15.0 270 > th dose independent rect. 17 20
2 34.94 temperature 15.0 10 > th dose independent rect. 20 18
5 35.33 temperature 15.0 270 > th dose independent rect. 8 14
8 35.61 temperature 10.0 10 > th dose dependent rect. 20 18
10 35.99 wind 1.0 270 > th dose independent rect. 13 4
11 36.11 temperature 10.0 270 > th dose independent rect. 13 4
13 36.11 atmosphere 1010.0 270 < th dose independent rect. 13 4
15 36.11 precipitation 0.1 270 < th dose independent rect. 13 4
17 36.11 precipitation 0.1 270 < th dose dependent rect. 13 4
19 36.16 wind 9.0 270 < th dose independent rect. 17 20
20 36.16 humidity 50.0 270 > th dose independent rect. 17 20
21 36.17 atmosphere 995.0 270 > th dose independent rect. 17 20
23 36.31 wind 9.0 270 < th dose independent rect. 13 4
29 36.81 radiation 1.0 270 > th dose independent rect. 13 4
30 36.82 wind 7.0 270 < th dose independent rect. 22 10
34 37.17 temperature 10.0 270 > th dose independent rect. 22 10
35 37.17 temperature 30.0 270 < th dose independent rect. 22 10
36 37.17 humidity 50.0 270 > th dose independent rect. 22 10
38 37.17 atmosphere 995.0 270 > th dose independent rect. 22 10
39 37.17 radiation 40.0 270 < th dose independent rect. 22 10
42 37.29 wind 1.0 90 > th dose independent rect. 13 6
43 37.30 atmosphere 995.0 270 > th dose independent rect. 13 4
46 37.36 precipitation 0.1 270 < th dose independent rect. 22 10
47 37.36 precipitation 0.1 270 < th dose dependent rect. 22 10
49 37.48 wind 9.0 270 < th dose independent rect. 8 14
55 37.57 atmosphere 995.0 90 > th dose independent rect. 19 19
57 37.58 precipitation 0.1 270 < th dose independent rect. 17 20
59 37.58 precipitation 0.1 270 < th dose dependent rect. 17 20
64 37.70 wind 9.0 90 < th dose independent rect. 19 19
70 37.74 wind 1.0 10 > th dose independent rect. 14 6
77 37.83 precipitation 0.1 10 < th dose independent rect. 14 6
78 37.83 precipitation 0.1 10 < th dose dependent rect. 14 6
79 37.84 radiation 40.0 90 < th dose independent rect. 13 6
85 37.89 atmosphere 1015.0 270 < th dose independent rect. 8 14
90 37.93 radiation 40.0 10 < th dose independent rect. 14 6
91 37.96 temperature 10.0 10 > th dose independent rect. 14 6
93 37.96 atmosphere 1010.0 10 < th dose independent rect. 14 6
96 37.96 atmosphere 995.0 10 > th dose independent rect. 20 18
107 38.14 wind 9.0 10 < th dose independent rect. 20 18
109 38.23 wind 9.0 10 < th dose independent rect. 14 6
118 38.30 precipitation 0.1 90 < th dose independent rect. 19 19
119 38.30 precipitation 0.1 90 < th dose dependent rect. 19 19
122 38.37 temperature 20.0 270 > th dose independent rect. 14 2
123 38.37 atmosphere 1015.0 270 < th dose independent rect. 17 20
124 38.38 wind 1.0 270 > th dose independent rect. 14 2
125 38.41 humidity 90.0 270 < th dose independent rect. 13 4
130 38.47 humidity 50.0 10 > th dose independent rect. 20 18
132 38.52 precipitation 0.1 10 < th dose independent rect. 20 18
133 38.52 precipitation 0.1 10 < th dose dependent rect. 20 18
135 38.57 precipitation 0.1 270 < th dose independent rect. 14 2
136 38.57 precipitation 0.1 270 < th dose dependent rect. 14 2
137 38.58 temperature 10.0 270 > th dose independent rect. 14 2
139 38.58 atmosphere 1010.0 270 < th dose independent rect. 14 2
146 38.67 wind 1.0 270 > th dose dependent rect. 13 4
147 38.67 atmosphere 995.0 270 > th dose dependent rect. 13 4
148 38.68 radiation 40.0 10 < th dose independent rect. 12 8
150 38.68 atmosphere 1015.0 10 < th dose independent rect. 20 18
151 38.70 wind 9.0 270 < th dose independent rect. 14 2
155 38.74 wind 9.0 270 < th dose independent rect. 16 22
157 38.75 atmosphere 1015.0 90 < th dose independent rect. 19 19
163 38.80 radiation 1.0 270 > th dose independent rect. 12 17
164 38.80 temperature 10.0 270 > th dose dependent rect. 13 4
165 38.80 radiation 40.0 270 < th dose dependent rect. 22 10
170 38.81 radiation 1.0 270 > th dose independent rect. 12 7
218 39.14 radiation 1.0 270 > th dose independent rect. 14 2
231 39.26 atmosphere 995.0 10 > th dose independent rect. 14 6
237 39.31 temperature 10.0 1440 > th dose independent rect. 15 6
240 39.31 temperature 10.0 1440 > th dose independent rect. 21 18
244 39.32 temperature 10.0 10 > th dose dependent rect. 14 6
270 39.46 wind 1.0 10 > th dose dependent rect. 14 6
293 39.60 precipitation 0.1 270 < th dose independent rect. 8 14
294 39.60 precipitation 0.1 270 < th dose dependent rect. 8 14
298 39.64 radiation 1.0 270 > th dose independent rect. 11 20
307 39.71 humidity 90.0 10 < th dose independent rect. 14 6
315 39.77 humidity 50.0 270 > th dose independent rect. 13 4
324 39.83 humidity 50.0 270 > th dose independent rect. 14 2
328 39.85 temperature 15.0 270 > th dose independent rect. 17 6
334 39.90 atmosphere 995.0 270 > th dose dependent rect. 14 2
339 39.98 temperature 10.0 270 > th dose dependent rect. 14 2
349 40.11 radiation 40.0 270 < th dose independent rect. 14 2
366 40.27 wind 1.0 270 > th dose independent rect. 8 14
367 40.30 temperature 15.0 270 > th dose independent rect. 17 9
382 40.40 wind 1.0 270 > th dose dependent rect. 14 2
393 40.49 temperature 15.0 270 > th dose independent rect. 18 4
395 40.50 humidity 50.0 10 > th dose independent rect. 14 6
396 40.50 atmosphere 995.0 10 > th dose dependent rect. 14 6
409 40.62 atmosphere 995.0 270 > th dose independent rect. 8 14
482 41.09 temperature 15.0 270 > th dose independent rect. 19 2
547 41.43 atmosphere 1015.0 270 < th dose independent rect. 22 10
598 41.65 radiation 10.0 270 < th dose dependent sin 16 NA
607 41.69 radiation 1.0 270 > th dose independent sin 17 NA
648 41.80 radiation 1.0 270 < th dose independent sin 17 NA
672 41.87 temperature 10.0 270 > th dose dependent rect. 18 5
691 41.92 temperature 10.0 270 > th dose dependent rect. 19 2
733 42.08 atmosphere 1010.0 270 < th dose independent rect. 19 2
744 42.13 radiation 10.0 270 < th dose dependent rect. 17 6
758 42.17 atmosphere 995.0 1440 > th dose independent rect. 21 17
761 42.19 atmosphere 1010.0 270 < th dose independent rect. 18 4
770 42.21 humidity 60.0 270 > th dose independent rect. 17 6
787 42.26 radiation 1.0 270 < th dose independent rect. 18 4
789 42.28 temperature 30.0 270 < th dose independent rect. 17 6
791 42.30 wind 1.0 270 > th dose independent rect. 17 20
794 42.31 radiation 1.0 270 < th dose dependent rect. 18 4
796 42.32 humidity 50.0 270 > th dose independent rect. 8 14
801 42.36 temperature 30.0 270 < th dose independent rect. 18 4
805 42.37 temperature 10.0 270 > th dose dependent rect. 7 5
807 42.38 humidity 60.0 270 > th dose independent rect. 18 4
824 42.48 radiation 10.0 270 < th dose independent rect. 17 6
840 42.59 temperature 10.0 270 > th dose dependent rect. 8 3
859 42.63 atmosphere 995.0 270 > th dose independent rect. 17 6
870 42.66 atmosphere 995.0 270 > th dose independent rect. 18 4
878 42.69 radiation 40.0 10 < th dose dependent rect. 13 7
887 42.73 wind 9.0 270 < th dose independent rect. 17 6
894 42.73 temperature 10.0 270 > th dose independent rect. 23 18
899 42.75 temperature 10.0 10 > th dose dependent rect. 9 5
910 42.78 temperature 10.0 270 > th dose independent rect. 22 20
914 42.80 wind 9.0 270 < th dose independent rect. 18 4
926 42.83 humidity 50.0 270 > th dose dependent rect. 18 4
927 42.83 temperature 10.0 90 > th dose dependent rect. 9 5
930 42.85 humidity 50.0 270 > th dose independent rect. 17 9
949 42.93 precipitation 0.1 270 < th dose independent rect. 23 18
951 42.93 precipitation 0.1 270 < th dose dependent rect. 23 18
987 43.02 wind 9.0 270 < th dose independent rect. 23 18
993 43.04 radiation 20.0 270 < th dose independent rect. 17 9
996 43.04 temperature 10.0 270 > th dose independent rect. 2 15
997 43.04 atmosphere 1015.0 270 < th dose independent rect. 2 15