BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0225200 Os01g0225200|AK121971
         (487 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0225200  Similar to GTP-binding protein-like                1010   0.0  
Os11g0638000  Similar to GTP-binding protein engA                 119   6e-27

>Os01g0225200 Similar to GTP-binding protein-like
          Length = 487

 Score = 1010 bits (2612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/487 (100%), Positives = 487/487 (100%)

Query: 1   MNKSESLDEHGVLTAAAGEAHRLGFGDPVAISAETGLGMAELYETLRPLFEDYMFQLTNN 60
           MNKSESLDEHGVLTAAAGEAHRLGFGDPVAISAETGLGMAELYETLRPLFEDYMFQLTNN
Sbjct: 1   MNKSESLDEHGVLTAAAGEAHRLGFGDPVAISAETGLGMAELYETLRPLFEDYMFQLTNN 60

Query: 61  GLNQDDPTSEAETEAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTR 120
           GLNQDDPTSEAETEAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTR
Sbjct: 61  GLNQDDPTSEAETEAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTR 120

Query: 121 DSIRTQFQFDNRTVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIA 180
           DSIRTQFQFDNRTVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIA
Sbjct: 121 DSIRTQFQFDNRTVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIA 180

Query: 181 KSKSSMNHPEVLIARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKEIQTVIPQVT 240
           KSKSSMNHPEVLIARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKEIQTVIPQVT
Sbjct: 181 KSKSSMNHPEVLIARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKEIQTVIPQVT 240

Query: 241 GIPVVFMSALEGRGRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKVMSRHSWKDSATQPKV 300
           GIPVVFMSALEGRGRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKVMSRHSWKDSATQPKV
Sbjct: 241 GIPVVFMSALEGRGRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKVMSRHSWKDSATQPKV 300

Query: 301 KYFTQVKARPPTFVAFMSGKVQLSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVK 360
           KYFTQVKARPPTFVAFMSGKVQLSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVK
Sbjct: 301 KYFTQVKARPPTFVAFMSGKVQLSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVK 360

Query: 361 SNSRNTEDAGTTYYELTLQKGGNLQWLLCYEGDLADGRETAAFQSKNVASGLASFAACTE 420
           SNSRNTEDAGTTYYELTLQKGGNLQWLLCYEGDLADGRETAAFQSKNVASGLASFAACTE
Sbjct: 361 SNSRNTEDAGTTYYELTLQKGGNLQWLLCYEGDLADGRETAAFQSKNVASGLASFAACTE 420

Query: 421 VIKMNRGKVRPLLRLSKPEGNGCGSVFDKAQWMEYDIELICQDEIMFCIVQRIDKRCSEF 480
           VIKMNRGKVRPLLRLSKPEGNGCGSVFDKAQWMEYDIELICQDEIMFCIVQRIDKRCSEF
Sbjct: 421 VIKMNRGKVRPLLRLSKPEGNGCGSVFDKAQWMEYDIELICQDEIMFCIVQRIDKRCSEF 480

Query: 481 RPIRSFT 487
           RPIRSFT
Sbjct: 481 RPIRSFT 487



>Os11g0638000 Similar to GTP-binding protein engA
          Length = 316

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 157/301 (52%), Gaps = 16/301 (5%)

Query: 72  ETEAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDN 131
           E +  E D + +P  +AIVGRPNVGKS++LN L+ E R +V P +G TRD+I T+F  ++
Sbjct: 12  ELDGVEEDGNYIP-AIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTED 70

Query: 132 RTVY-LVDTAGWMERSGKEKGPA---SLSVVQSRKNLMRAHIVALVLDGEKIAKSKSSMN 187
              Y L+DTAG   R+      +   +LSV ++ + + R+ +VALV++      + + + 
Sbjct: 71  GQKYKLIDTAGIRRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVE------AMACIT 124

Query: 188 HPEVLIARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKEIQTVIPQVTGIPVVFM 247
             +  IA +  +EG+  V++VNK D +        +      ++++  +  +   P+V+ 
Sbjct: 125 EQDYKIAERIEKEGKACVIVVNKWDTIPNKN---HQSTTYYEQDVREKLRILDWAPIVYC 181

Query: 248 SALEGRGRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKVMSRHSWKDS--ATQPKVKYFTQ 305
           SA  G     ++       ++   RL TS LN+ +R+ ++      +    + +V Y TQ
Sbjct: 182 SATHGSSVDKIISAAALVEKERSRRLGTSILNQVVREAIAFKPPPRTRGGKRGRVYYTTQ 241

Query: 306 VKARPPTFVAFMSGKVQLSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVKSNSRN 365
              RPPTFV F++      +T  R++ K L+ D    G PIR++ R+  R +    ++ N
Sbjct: 242 AAIRPPTFVFFVNDAKLFPETFRRYMEKKLRSDAGFPGTPIRLLWRSRKRPDKKGKSADN 301

Query: 366 T 366
           +
Sbjct: 302 S 302



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,948,430
Number of extensions: 650485
Number of successful extensions: 1931
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1929
Number of HSP's successfully gapped: 2
Length of query: 487
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 382
Effective length of database: 11,553,331
Effective search space: 4413372442
Effective search space used: 4413372442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)