Os11g0638000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein engA.
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Os11g0638000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein engA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.4 | 0.389 | 12.1 | 0.0647 | 1.45 | 0.766 | -0.923 | 0.483 | -0.227 | 20.5 | 25.5 | 308 | -- | -- |
| 68.61 | 0.386 | 12.1 | -0.03 | 1.4 | 0.819 | -0.868 | -- | -0.268 | 20.5 | 25.7 | 342 | -- | -- |
| 70.91 | 0.392 | 12.1 | 0.0303 | 1.41 | 0.811 | -- | 0.253 | -0.257 | 20.5 | 25.51 | 337 | -- | -- |
| 70.92 | 0.392 | 12.1 | -0.0476 | 1.4 | 0.83 | -- | -- | -0.268 | 20.6 | 25.7 | 341 | -- | -- |
| 145.34 | 0.561 | 12.1 | -0.138 | -- | 1.62 | -- | -0.25 | -0.436 | -- | 25.86 | 509 | -- | -- |
| 97.07 | 0.462 | 12.1 | 0.164 | 1.89 | -- | -0.771 | -- | 0.0664 | 19.7 | -- | -- | -- | -- |
| 98.76 | 0.465 | 12.1 | 0.184 | 1.89 | -- | -- | -- | 0.0656 | 19.7 | -- | -- | -- | -- |
| 144.26 | 0.559 | 12.1 | -0.296 | -- | 1.63 | -- | -- | -0.446 | -- | 25.89 | 513 | -- | -- |
| 70.98 | 0.392 | 12.1 | -- | 1.4 | 0.824 | -- | -- | -0.266 | 20.5 | 25.7 | 341 | -- | -- |
| 290.62 | 0.797 | 12 | 0.159 | -- | -- | -- | -- | 0.0379 | -- | -- | -- | -- | -- |
| 99.66 | 0.467 | 12.1 | -- | 1.89 | -- | -- | -- | 0.045 | 19.7 | -- | -- | -- | -- |
| 146.5 | 0.564 | 12.1 | -- | -- | 1.59 | -- | -- | -0.403 | -- | 25.89 | 513 | -- | -- |
| 291.29 | 0.797 | 12 | -- | -- | -- | -- | -- | 0.0202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 3 | 54.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 7 | 55.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 53 | 60.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 54 | 60.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 55 | 60.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 68 | 61.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 74 | 62.17 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 85 | 62.61 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 92 | 62.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 98 | 62.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 114 | 63.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 117 | 63.51 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 130 | 63.84 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 154 | 64.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 159 | 64.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 167 | 64.36 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 214 | 64.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 248 | 65.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 319 | 66.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 333 | 66.21 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 20 |
| 491 | 67.45 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 16 |
| 498 | 67.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 503 | 67.57 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 531 | 67.70 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 588 | 68.07 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 633 | 68.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 896 | 69.61 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 908 | 69.67 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 947 | 69.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |