Os01g0225200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein-like.
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Os01g0225200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.53 | 0.247 | 9.46 | 0.217 | 0.263 | -1.8 | -0.516 | -1.36 | -0.0668 | 17.3 | 30.79 | 96 | -- | -- |
| 29.42 | 0.253 | 9.48 | 0.0153 | 0.249 | -1.86 | -0.157 | -- | -0.121 | 16.7 | 31.52 | 105 | -- | -- |
| 28.1 | 0.247 | 9.46 | 0.185 | 0.27 | -1.79 | -- | -1.16 | -0.0792 | 17.2 | 30.53 | 95 | -- | -- |
| 29.38 | 0.252 | 9.48 | 0.00165 | 0.27 | -1.81 | -- | -- | -0.114 | 17 | 31.3 | 104 | -- | -- |
| 30.74 | 0.258 | 9.46 | 0.149 | -- | -1.97 | -- | -1.24 | -0.116 | -- | 30.72 | 132 | -- | -- |
| 69.04 | 0.39 | 9.41 | 0.422 | 0.82 | -- | 0.341 | -- | 0.195 | 15.7 | -- | -- | -- | -- |
| 69.38 | 0.39 | 9.41 | 0.427 | 0.822 | -- | -- | -- | 0.197 | 15.7 | -- | -- | -- | -- |
| 32.12 | 0.264 | 9.48 | -0.0333 | -- | -2.03 | -- | -- | -0.156 | -- | 31.42 | 132 | -- | -- |
| 29.38 | 0.252 | 9.48 | -- | 0.27 | -1.8 | -- | -- | -0.115 | 16.9 | 31.3 | 104 | -- | -- |
| 106.81 | 0.483 | 9.41 | 0.393 | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
| 74.19 | 0.403 | 9.42 | -- | 0.814 | -- | -- | -- | 0.15 | 15.7 | -- | -- | -- | -- |
| 32.18 | 0.264 | 9.48 | -- | -- | -2.03 | -- | -- | -0.146 | -- | 31.49 | 128 | -- | -- |
| 110.88 | 0.491 | 9.42 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.66 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 2 | 28.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 28.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 4 | 28.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 6 | 28.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 7 | 28.53 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 11 | 28.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 19 | 28.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 21 | 28.94 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 22 | 28.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 27 | 29.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 31 | 29.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 39 | 29.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 46 | 29.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 63 | 30.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 65 | 30.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 77 | 30.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 97 | 31.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 105 | 31.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 108 | 31.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 137 | 32.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 170 | 32.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 190 | 33.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 225 | 33.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 295 | 34.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 338 | 35.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 352 | 35.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 387 | 35.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 391 | 35.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 420 | 35.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 20 |
| 483 | 36.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 484 | 36.04 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 493 | 36.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 522 | 36.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 531 | 36.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 584 | 36.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 685 | 36.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 756 | 36.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 810 | 36.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 813 | 36.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 15 |
| 962 | 37.12 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |