BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0208600 Os01g0208600|AK120865
         (1334 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0208600  Actin-binding WH2 domain containing protein        2354   0.0  
Os03g0816900  Conserved hypothetical protein                      184   5e-46
Os03g0298700  Conserved hypothetical protein                      174   4e-43

>Os01g0208600 Actin-binding WH2 domain containing protein
          Length = 1334

 Score = 2354 bits (6100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1165/1321 (88%), Positives = 1165/1321 (88%)

Query: 1    MPLVRFEVRNEVGLGDPDLYXXXXXXXXXXXXXXXXXXXXXXXEAEPKALLEGVAVAGLV 60
            MPLVRFEVRNEVGLGDPDLY                       EAEPKALLEGVAVAGLV
Sbjct: 1    MPLVRFEVRNEVGLGDPDLYGGGGGGGGGGGGGGVGAAAKKGGEAEPKALLEGVAVAGLV 60

Query: 61   GILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQNIEAALPSLEKAVKNQKSHIH 120
            GILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQNIEAALPSLEKAVKNQKSHIH
Sbjct: 61   GILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQNIEAALPSLEKAVKNQKSHIH 120

Query: 121  FTYVPGSDWHAQLKDEQNHLLSSDLPRFMMDSYEECRDPPRLYLLDKFDNAGAGACSRRH 180
            FTYVPGSDWHAQLKDEQNHLLSSDLPRFMMDSYEECRDPPRLYLLDKFDNAGAGACSRRH
Sbjct: 121  FTYVPGSDWHAQLKDEQNHLLSSDLPRFMMDSYEECRDPPRLYLLDKFDNAGAGACSRRH 180

Query: 181  SDPSYFKKAWDMMRADKTGNFQREKKSQKIKRKGSRLREPYHGQTTPRQRNGELQRALTA 240
            SDPSYFKKAWDMMRADKTGNFQREKKSQKIKRKGSRLREPYHGQTTPRQRNGELQRALTA
Sbjct: 181  SDPSYFKKAWDMMRADKTGNFQREKKSQKIKRKGSRLREPYHGQTTPRQRNGELQRALTA 240

Query: 241  VQLTSRHFATPSTDGRSLSENRSTSDVRSNPDNIXXXXXXXXXXXXXXTEQVLDTKPTVV 300
            VQLTSRHFATPSTDGRSLSENRSTSDVRSNPDNI              TEQVLDTKPTVV
Sbjct: 241  VQLTSRHFATPSTDGRSLSENRSTSDVRSNPDNISRSSSFSSKARLSFTEQVLDTKPTVV 300

Query: 301  PHENGHDXXXXXXXXXXXXTPLHTRLNGTSADDLGDDLKQSSLLDDMTARSPSVKWDEKA 360
            PHENGHD            TPLHTRLNGTSADDLGDDLKQSSLLDDMTARSPSVKWDEKA
Sbjct: 301  PHENGHDKLSNNNLHKLSNTPLHTRLNGTSADDLGDDLKQSSLLDDMTARSPSVKWDEKA 360

Query: 361  EITMSTTSVYCDDVVMDKAEHVQSKCISPEQQEIDHREMETLEQQEALHQKAKQLLVSSG 420
            EITMSTTSVYCDDVVMDKAEHVQSKCISPEQQEIDHREMETLEQQEALHQKAKQLLVSSG
Sbjct: 361  EITMSTTSVYCDDVVMDKAEHVQSKCISPEQQEIDHREMETLEQQEALHQKAKQLLVSSG 420

Query: 421  LNHHDEVPSETDNYVDAXXXXXXXXXXXXXXQTKSRVKPVPSLNVDVPQVELIDNIVTES 480
            LNHHDEVPSETDNYVDA              QTKSRVKPVPSLNVDVPQVELIDNIVTES
Sbjct: 421  LNHHDEVPSETDNYVDALNTLESETETEPELQTKSRVKPVPSLNVDVPQVELIDNIVTES 480

Query: 481  PDSSVAEFPDAYQNSSMPPAPESAADFPSLSSADAPDISEPVLSGYTANPHPEVSAIATN 540
            PDSSVAEFPDAYQNSSMPPAPESAADFPSLSSADAPDISEPVLSGYTANPHPEVSAIATN
Sbjct: 481  PDSSVAEFPDAYQNSSMPPAPESAADFPSLSSADAPDISEPVLSGYTANPHPEVSAIATN 540

Query: 541  TPVSNTEDAPGPLEISESASRAYIITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSS 600
            TPVSNTEDAPGPLEISESASRAYIITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSS
Sbjct: 541  TPVSNTEDAPGPLEISESASRAYIITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSS 600

Query: 601  YTPTIPIKESSIVSQNTNAENVSGDCSEGTACAISYSQHIISDKPTNEVXXXXXXXXXXX 660
            YTPTIPIKESSIVSQNTNAENVSGDCSEGTACAISYSQHIISDKPTNEV           
Sbjct: 601  YTPTIPIKESSIVSQNTNAENVSGDCSEGTACAISYSQHIISDKPTNEVSATNSSPDDTS 660

Query: 661  XXXXXXXXGGIVEVSNSQPMPLNDSLENGCATQGLPANAPTNSTGVSSVKLWTNAGLFGL 720
                    GGIVEVSNSQPMPLNDSLENGCATQGLPANAPTNSTGVSSVKLWTNAGLFGL
Sbjct: 661  SDEDTVESGGIVEVSNSQPMPLNDSLENGCATQGLPANAPTNSTGVSSVKLWTNAGLFGL 720

Query: 721  EPSKPPVFGAHDGPKEDTTPGHTQPQLCHSTGCPEVHFSKPTESAQVYVPNGNSPITSSF 780
            EPSKPPVFGAHDGPKEDTTPGHTQPQLCHSTGCPEVHFSKPTESAQVYVPNGNSPITSSF
Sbjct: 721  EPSKPPVFGAHDGPKEDTTPGHTQPQLCHSTGCPEVHFSKPTESAQVYVPNGNSPITSSF 780

Query: 781  VGKLVGICPGSTSHSSETNQSTVRTPDTVIGQTEGSTGCSTSFEHSDHKNIIGKQTSISE 840
            VGKLVGICPGSTSHSSETNQSTVRTPDTVIGQTEGSTGCSTSFEHSDHKNIIGKQTSISE
Sbjct: 781  VGKLVGICPGSTSHSSETNQSTVRTPDTVIGQTEGSTGCSTSFEHSDHKNIIGKQTSISE 840

Query: 841  LLESEDSAENGAEMFSKTDMTGRNNMNQVSASSFSSIAQRFLANTLQRRTPKYTDLPMSS 900
            LLESEDSAENGAEMFSKTDMTGRNNMNQVSASSFSSIAQRFLANTLQRRTPKYTDLPMSS
Sbjct: 841  LLESEDSAENGAEMFSKTDMTGRNNMNQVSASSFSSIAQRFLANTLQRRTPKYTDLPMSS 900

Query: 901  VIVNTDANGTDESTQISSLAPNETTFEASQFEKKTENDTNGLPKXXXXXXXXXXXXXXPP 960
            VIVNTDANGTDESTQISSLAPNETTFEASQFEKKTENDTNGLPK              PP
Sbjct: 901  VIVNTDANGTDESTQISSLAPNETTFEASQFEKKTENDTNGLPKSSLFSSSHYSEKSSPP 960

Query: 961  LEYMKISFHPMSAFEMSKLDLDFSDENLHENADDMMLPTFQLLPGSSVPQLGSGSESEDD 1020
            LEYMKISFHPMSAFEMSKLDLDFSDENLHENADDMMLPTFQLLPGSSVPQLGSGSESEDD
Sbjct: 961  LEYMKISFHPMSAFEMSKLDLDFSDENLHENADDMMLPTFQLLPGSSVPQLGSGSESEDD 1020

Query: 1021 TFGXXXXXXXXXXXXXXXXXNSELWDQEDANGLEDHDMHNNPNQIGSFGAPISSFVEFEQ 1080
            TFG                 NSELWDQEDANGLEDHDMHNNPNQIGSFGAPISSFVEFEQ
Sbjct: 1021 TFGRSYSYSSYDDLSPRLYSNSELWDQEDANGLEDHDMHNNPNQIGSFGAPISSFVEFEQ 1080

Query: 1081 MDLSGAKSTVSXXXXXXXXXXXXXXSHPAGELPNFDTLMAHQNEAFIPHNPVSLSPDEGQ 1140
            MDLSGAKSTVS              SHPAGELPNFDTLMAHQNEAFIPHNPVSLSPDEGQ
Sbjct: 1081 MDLSGAKSTVSLTDLGDDNGLGTLDSHPAGELPNFDTLMAHQNEAFIPHNPVSLSPDEGQ 1140

Query: 1141 XXXXXXXXXMQWRTMRQVASVEEGRGSAAKEDMLESTSDLPPVHTPVQEEHLLPIAPPDQ 1200
                     MQWRTMRQVASVEEGRGSAAKEDMLESTSDLPPVHTPVQEEHLLPIAPPDQ
Sbjct: 1141 LPPPPPLPPMQWRTMRQVASVEEGRGSAAKEDMLESTSDLPPVHTPVQEEHLLPIAPPDQ 1200

Query: 1201 QNLLPIAPPDQQGHAKENDRKVDGVKEISNPLDIEIRASLLQQIRDKSGQQKLNGHEKSK 1260
            QNLLPIAPPDQQGHAKENDRKVDGVKEISNPLDIEIRASLLQQIRDKSGQQKLNGHEKSK
Sbjct: 1201 QNLLPIAPPDQQGHAKENDRKVDGVKEISNPLDIEIRASLLQQIRDKSGQQKLNGHEKSK 1260

Query: 1261 AVGNDTKNLDEREELLQQIRSKTFNLRRXXXXXXXXXXXXXXXXXXXXILEKANAIRQAV 1320
            AVGNDTKNLDEREELLQQIRSKTFNLRR                    ILEKANAIRQAV
Sbjct: 1261 AVGNDTKNLDEREELLQQIRSKTFNLRRTNASKTNTSSPTTANSSVVAILEKANAIRQAV 1320

Query: 1321 A 1321
            A
Sbjct: 1321 A 1321



>Os03g0816900 Conserved hypothetical protein
          Length = 1155

 Score =  184 bits (466), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 53  GVAVAGLVGILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQNIEAALPSLEKAV 112
           GVA+AGLVG+LRQLGDLAEFAA++FHDLHE V+ T++RG  ++ R++ +EA  P++EKA+
Sbjct: 1   GVAMAGLVGVLRQLGDLAEFAAEIFHDLHEDVMATASRGHGLMLRLRQLEAEFPAVEKAI 60

Query: 113 KNQKSHIHFTYVPGSDWHAQLKDEQNHLLSSDLPRFMMDSYEECRDPPRLYLLDKFDNAG 172
            +Q  H ++ +  G +WH  L+ +QN +   D+PRF++DSYEECR PPRL+ LDKFD AG
Sbjct: 61  ISQSDHSNYPHDDGVEWHTNLQIDQNMITQGDMPRFILDSYEECRGPPRLFTLDKFDVAG 120

Query: 173 AGACSRRHSDPSYFK--KAWDMMRAD 196
           AGA  +R+SDPS+FK   + DM+  D
Sbjct: 121 AGASLKRYSDPSFFKTEHSSDMIETD 146



>Os03g0298700 Conserved hypothetical protein
          Length = 1287

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 118/190 (62%), Gaps = 26/190 (13%)

Query: 1   MPLVRFEVRNEVGLGDPDLYXXXXXXXXXXXXXXXXXXXXXXXEAEPKALLEGVAVAGLV 60
           MPL R EV NE  LG  +LY                       + +P+A+L+GVA+AGLV
Sbjct: 1   MPLSRHEVGNEYSLGGRELYRRAN-------------------QHDPEAVLDGVAMAGLV 41

Query: 61  GILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQNIEAALPSLEKAVKNQKSHIH 120
           G+LRQLGDLAEFAA VFH L+++V+T SARG  ++ RVQ +EA LP +EK       H  
Sbjct: 42  GVLRQLGDLAEFAAQVFHGLYDEVMTASARGHGLMLRVQQLEAELPLVEK----DSCHTD 97

Query: 121 FTYVP---GSDWHAQLKDEQNHLLSSDLPRFMMDSYEECRDPPRLYLLDKFDNAGAGACS 177
           + YV    G +WH+  + E   +   D PRF+MDS ++C  PP+L++LDK+D  G GAC 
Sbjct: 98  YLYVASNRGIEWHSNPRLESGVVTKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACL 157

Query: 178 RRHSDPSYFK 187
           +R++DPS+FK
Sbjct: 158 KRYTDPSFFK 167



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 41,780,069
Number of extensions: 1741329
Number of successful extensions: 4417
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4404
Number of HSP's successfully gapped: 3
Length of query: 1334
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1221
Effective length of database: 11,135,619
Effective search space: 13596590799
Effective search space used: 13596590799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 162 (67.0 bits)