BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0205600 Os01g0205600|AK067719
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0205600 Enoyl-CoA hydratase/isomerase domain containin... 296 7e-81
Os05g0529200 Enoyl-CoA hydratase/isomerase domain containin... 100 2e-21
>Os01g0205600 Enoyl-CoA hydratase/isomerase domain containing protein
Length = 247
Score = 296 bits (759), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 161/237 (67%), Positives = 161/237 (67%)
Query: 1 MDTASLCTVEKRGAVHVITLTGAGEHRLGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 60
MDTASLCTVEKRGAVHVITLTGAGEHRLGPP E
Sbjct: 1 MDTASLCTVEKRGAVHVITLTGAGEHRLGPPLLSALRSAVAAVRAAAAAGAGGALVIAGE 60
Query: 61 GKYFSNGFDLDWARTVPAELHASMGGAFRGLVADLLALPVPXXXXXXXXXXXXXXXXXXX 120
GKYFSNGFDLDWARTVPAELHASMGGAFRGLVADLLALPVP
Sbjct: 61 GKYFSNGFDLDWARTVPAELHASMGGAFRGLVADLLALPVPTVAAVTGHAAAAGCALALA 120
Query: 121 XXXVVMRASRGFLYMSEVDAGLKIVDFFAELIRQKVPDAVNRRDLVLRGDKMTAADALRR 180
VVMRASRGFLYMSEVDAGLKIVDFFAELIRQKVPDAVNRRDLVLRGDKMTAADALRR
Sbjct: 121 HDAVVMRASRGFLYMSEVDAGLKIVDFFAELIRQKVPDAVNRRDLVLRGDKMTAADALRR 180
Query: 181 GIXXXXXXXXXXXXXXXXXXXXXXXXXXGWDGEIVAETRKAIWPELWAKVKDHATDE 237
GI GWDGEIVAETRKAIWPELWAKVKDHATDE
Sbjct: 181 GIVDAAVDGGVDDVVAAAVREAEALAARGWDGEIVAETRKAIWPELWAKVKDHATDE 237
>Os05g0529200 Enoyl-CoA hydratase/isomerase domain containing protein
Length = 242
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 97/226 (42%), Gaps = 3/226 (1%)
Query: 6 LCTVEKRGAVHVITLTGAGEHRLGPPXX-XXXXXXXXXXXXXXXXXXXXXXXXXXEGKYF 64
+CT+E+RG V V+TLTG GEHRLG EG++F
Sbjct: 1 MCTLEQRGRVFVLTLTGDGEHRLGHSLIGSIRAAVSSVAAAAAAAGPGAALVTVAEGRFF 60
Query: 65 SNGFDLDWARTVPAELHASMGGAFRGLVADLLALPVPXXXXXXXXXXXXXXXXXXXXXXV 124
SNG D+ P+ + + A R L ADLLALP+P
Sbjct: 61 SNGLDIGPGGIPPSRV-GELVVALRPLAADLLALPMPTVAAVTGHASAGGFLLTLCHDYR 119
Query: 125 VMRASRGFLYMSEVDAGLKIVDFFAELIRQKVPDAVNRRDLVLRGDKMTAADALRRGIXX 184
+MRA RG LYMSE+D GL + +F ++R K+ A RD+ LRG K+ AA+A GI
Sbjct: 120 LMRADRGVLYMSEIDIGLPLPPYFVAILRAKITAAHALRDVTLRGRKLKAAEAKEMGIVD 179
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXXGWDGEIVAETRKAIWPELWAKV 230
W+G + + R +++PE V
Sbjct: 180 VVCPTAAETAAEAVKLAEQLAARK-WNGNVYSSIRISMFPEACRSV 224
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,470,869
Number of extensions: 132324
Number of successful extensions: 264
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)