BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0201800 Os01g0201800|Os01g0201800
(769 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0201800 1313 0.0
Os01g0201900 Conserved hypothetical protein 912 0.0
Os05g0203900 Conserved hypothetical protein 159 1e-38
>Os01g0201800
Length = 769
Score = 1313 bits (3399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/769 (85%), Positives = 654/769 (85%)
Query: 1 MAVVAAFSIREYTASIRGAAGAEGRRLYGLGAGDLPPMEARRFRWWADELATAXXXXXXX 60
MAVVAAFSIREYTASIRGAAGAEGRRLYGLGAGDLPPMEARRFRWWADELATA
Sbjct: 1 MAVVAAFSIREYTASIRGAAGAEGRRLYGLGAGDLPPMEARRFRWWADELATAPPLPPWS 60
Query: 61 XXXXXXXXXXXXXXXRRTLGKARAPKKRSIXXXXXXXXXXXXXXXXXXXXXXXXXXXEAL 120
RRTLGKARAPKKRSI EAL
Sbjct: 61 LSPSPSPPPPPTKPSRRTLGKARAPKKRSISDLFAAAPPLALPSSDSGGGGNDNDDDEAL 120
Query: 121 CAIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCDSEGNFTIKEALDKTNLPGG 180
CAIM TCDSEGNFTIKEALDKTNLPGG
Sbjct: 121 CAIMRRAREKKRKRRLQEEEEEEAGAASASVTAAAAAETCDSEGNFTIKEALDKTNLPGG 180
Query: 181 LDTPQASRRPDGVHHARTDEERSPDSKRRKKVXXXXXXXXXXXXXXXXRYSESKSATNKV 240
LDTPQASRRPDGVHHARTDEERSPDSKRRKKV RYSESKSATNKV
Sbjct: 181 LDTPQASRRPDGVHHARTDEERSPDSKRRKKVKITNLDKNNNKKIDKKRYSESKSATNKV 240
Query: 241 GKQHDLKKMLPLHSILKKYTRHTSVKMVKEKHGDPKGTEVIEVCRKSVKRVKFSEVDDVL 300
GKQHDLKKMLPLHSILKKYTRHTSVKMVKEKHGDPKGTEVIEVCRKSVKRVKFSEVDDVL
Sbjct: 241 GKQHDLKKMLPLHSILKKYTRHTSVKMVKEKHGDPKGTEVIEVCRKSVKRVKFSEVDDVL 300
Query: 301 GINKQNICKLFXXXXXXXXXXXXXXXXEGDKHIAAESCSSHMPETATKEASKSTDHEDSL 360
GINKQNICKLF EGDKHIAAESCSSHMPETATKEASKSTDHEDSL
Sbjct: 301 GINKQNICKLFSDALASSSSSSTDMSSEGDKHIAAESCSSHMPETATKEASKSTDHEDSL 360
Query: 361 ELTSTQLSSNLFDLNEALPESTDLNYPYVSNPEDPNHEPRQHEPLDSDVQVIDEGRQNQQ 420
ELTSTQLSSNLFDLNEALPESTDLNYPYVSNPEDPNHEPRQHEPLDSDVQVIDEGRQNQQ
Sbjct: 361 ELTSTQLSSNLFDLNEALPESTDLNYPYVSNPEDPNHEPRQHEPLDSDVQVIDEGRQNQQ 420
Query: 421 DLSLDSHGLQCQSVPESGLERARSSISPGTFLHGEFMEVSDTFFVGSSRKLTGELAESHG 480
DLSLDSHGLQCQSVPESGLERARSSISPGTFLHGEFMEVSDTFFVGSSRKLTGELAESHG
Sbjct: 421 DLSLDSHGLQCQSVPESGLERARSSISPGTFLHGEFMEVSDTFFVGSSRKLTGELAESHG 480
Query: 481 DYAFNLNLGGSQPSNEGEVPPQDCNASTGVASSSHSEMGVQQECRPAAGQTVRLMGKDLS 540
DYAFNLNLGGSQPSNEGEVPPQDCNASTGVASSSHSEMGVQQECRPAAGQTVRLMGKDLS
Sbjct: 481 DYAFNLNLGGSQPSNEGEVPPQDCNASTGVASSSHSEMGVQQECRPAAGQTVRLMGKDLS 540
Query: 541 VSTTRGEYVSGTHFYTEDHPTKLFLELPRQGRPYLSLQAQSVPNVSANSASPSQSHIRYT 600
VSTTRGEYVSGTHFYTEDHPTKLFLELPRQGRPYLSLQAQSVPNVSANSASPSQSHIRYT
Sbjct: 541 VSTTRGEYVSGTHFYTEDHPTKLFLELPRQGRPYLSLQAQSVPNVSANSASPSQSHIRYT 600
Query: 601 APQNLSHSFPTTNALSGDRLRYDDRFSYLSGSQHHGNVLLGSPSLTSDANLPRSYGVVSA 660
APQNLSHSFPTTNALSGDRLRYDDRFSYLSGSQHHGNVLLGSPSLTSDANLPRSYGVVSA
Sbjct: 601 APQNLSHSFPTTNALSGDRLRYDDRFSYLSGSQHHGNVLLGSPSLTSDANLPRSYGVVSA 660
Query: 661 GSSVHPHNSPSFAFTHPRRMIVEEASGSRRDAACPSRNAENVAARAAIPEMQAQRTGLMK 720
GSSVHPHNSPSFAFTHPRRMIVEEASGSRRDAACPSRNAENVAARAAIPEMQAQRTGLMK
Sbjct: 661 GSSVHPHNSPSFAFTHPRRMIVEEASGSRRDAACPSRNAENVAARAAIPEMQAQRTGLMK 720
Query: 721 LTPGAKHILMPSDTTGDGTSMPVYSCVSFGSRRGNASATRNMGAELYKL 769
LTPGAKHILMPSDTTGDGTSMPVYSCVSFGSRRGNASATRNMGAELYKL
Sbjct: 721 LTPGAKHILMPSDTTGDGTSMPVYSCVSFGSRRGNASATRNMGAELYKL 769
>Os01g0201900 Conserved hypothetical protein
Length = 607
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/609 (78%), Positives = 488/609 (80%), Gaps = 90/609 (14%)
Query: 249 MLPLHSILKKYTRHTSVKMVKEKHGDPKGTEVIEVCRKSVKRVKFSEVDDVLGINKQNIC 308
MLPLHSILKKYT+HTSVKMVKEKHGDPKGTEVIEVCRKSVKRVKFSEV+DVLGINKQNIC
Sbjct: 1 MLPLHSILKKYTKHTSVKMVKEKHGDPKGTEVIEVCRKSVKRVKFSEVNDVLGINKQNIC 60
Query: 309 KLFXXXXXXXXXXXXXXXXEGDKHIAAESCSSHMPETATKEASKSTDHEDSLELTSTQLS 368
KLF EGDKHIAAESCSSHMPETATKEASKSTDHEDSLELTSTQLS
Sbjct: 61 KLFSDALASSSSSSTDMSSEGDKHIAAESCSSHMPETATKEASKSTDHEDSLELTSTQLS 120
Query: 369 SNLFDLNEALPESTDLNYPYVSNPEDPNHEPRQHEPLDSDVQVIDEGRQNQQDLSLDSHG 428
SNLFDLNEALPESTDLNYPYVSNPE+PNHEPRQHEPLDSDVQVIDEG QNQQDLSLDSHG
Sbjct: 121 SNLFDLNEALPESTDLNYPYVSNPEEPNHEPRQHEPLDSDVQVIDEGGQNQQDLSLDSHG 180
Query: 429 LQCQSVPESGLERARSSISPGTFLHGEFMEVSDTFFVGSSRKLTGELAESHGD------- 481
LQCQSVPESGLERARSSISPGTFLHGEFMEVSDTFFVGSSRKLT ELAESHGD
Sbjct: 181 LQCQSVPESGLERARSSISPGTFLHGEFMEVSDTFFVGSSRKLT-ELAESHGDCSSGSVK 239
Query: 482 ---------------------------YAFNLNLGGSQPSNEGEVPPQDCNASTGVASSS 514
YAFNLNLGGSQPSNEGEVPPQDCNAS G ASSS
Sbjct: 240 DAMTKGKSPCALPNHTVQDSFQQHQRYYAFNLNLGGSQPSNEGEVPPQDCNASAGAASSS 299
Query: 515 HSEMGVQQECRPAAGQTVRLMGKDLSVSTTRGEYVSGTHFYTEDHPTKLFLELPRQGRPY 574
H+EMGVQQ CRPA GQTVRLMGKDL+VSTTRGEYVSGTH YTEDHPTKLFLELPRQGRPY
Sbjct: 300 HAEMGVQQGCRPAPGQTVRLMGKDLAVSTTRGEYVSGTHSYTEDHPTKLFLELPRQGRPY 359
Query: 575 LSLQAQSVPNVSANSASPSQSHIRYTAPQNLSHSFPTTNALSGDRLRYDDRFSYLSGSQH 634
LSLQAQSVPNVSANSASPSQSHIRYTAPQNLSHSFP NALSGDRL+YDDRFSYLSGSQH
Sbjct: 360 LSLQAQSVPNVSANSASPSQSHIRYTAPQNLSHSFPMANALSGDRLQYDDRFSYLSGSQH 419
Query: 635 HGNVLLGSPSLTS----------------------------------------------D 648
HGNVLLGSPSLTS
Sbjct: 420 HGNVLLGSPSLTSHGSAALRQNLPYVWSRYSDPSSSSTASPSAPILPTTAQHVTPSSVYH 479
Query: 649 ANLPRSYGVVSAGSSVHPHNSPSFAFTHPRRMIVEEASGSRRDAACPSRNAENVAARAAI 708
ANLPRSYGVVSAGSSVHPHNSPSF FT PRR IVEEASGSRRDAACPSRNAENVAARAAI
Sbjct: 480 ANLPRSYGVVSAGSSVHPHNSPSFTFTRPRR-IVEEASGSRRDAACPSRNAENVAARAAI 538
Query: 709 PEM--------QAQRTGLMKLTPGAKHILMPSDTTGDGTSMPVYSCVSFGSRRGNASATR 760
PEM A+RTG MKLTPGAKHILMPSDTTGDGTSMPVYSCVSFGS+ GNASATR
Sbjct: 539 PEMPSSSSGGRHARRTGPMKLTPGAKHILMPSDTTGDGTSMPVYSCVSFGSKSGNASATR 598
Query: 761 NMGAELYKL 769
NMGA LYKL
Sbjct: 599 NMGAGLYKL 607
>Os05g0203900 Conserved hypothetical protein
Length = 755
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 181/600 (30%), Positives = 259/600 (43%), Gaps = 120/600 (20%)
Query: 250 LPLHSILKKYTRHTS--VKMVKEKHGDPKGTEVIEVCRKSVKRVKFSEVDDVLGINK--- 304
+P +SIL+K+T+ +S V + KEK + KG+E IE+ K K V FS VDD+ NK
Sbjct: 167 VPKNSILRKHTKRSSFTVSINKEKCSNLKGSEAIELSHKLGKHVTFSGVDDIHIRNKLSS 226
Query: 305 -----QNICKLFXXXXXXXXXXXXXXXXEGDKHIAAESCSSHMPETATKEASKSTDHED- 358
QN C ++ E D+ ++A+ SSH KEAS ++
Sbjct: 227 TLPQLQNHCNVYSDKSN-----------EADRLVSAK-ISSH----ENKEASGRDIYDRW 270
Query: 359 SLELTSTQLSSNLFDLNEALPESTDLNYPYVSNPEDPNHEPRQHEPLDSDVQVIDEGRQ- 417
+ E + + NL DLN LP D N ++S E P+ E E SD+Q+ + R+
Sbjct: 271 TSESSGAKDPINLIDLNRTLPCIPDFNGAFISGSEVPDLE--HTENATSDLQIPGDVREE 328
Query: 418 ----NQQDLSLDSHGLQCQSVPESGLERARSSISPGTFLHGEFMEVSDTFFVGSSRKLTG 473
+ QDL S QC+ + L R + S + L E + +SD +G T
Sbjct: 329 AVLKHNQDLHSKSPRSQCE-LNSCDLGRIINLRSIASLLPDEAINISDRGMIGHPLNST- 386
Query: 474 ELAESHGDYA---------------------------------FNLNLGGSQPSNEGEVP 500
E+ + + DY N+NLG + E
Sbjct: 387 EVNKFYADYERSSVRDDTMEGKAPYILPQHTVQYTSQFTENWYTNMNLGNFHHAGR-EFS 445
Query: 501 PQDC-NASTGVASSSHSEMGVQQECRPAAGQTVRLMGKDLSVSTTRGEYVSGT---HFYT 556
C N HSE+ VQ E + +T+RLMGKDL+VSTT G+ + T H +
Sbjct: 446 SCPCENQLNSEKPMLHSEINVQHEHAVMSQRTMRLMGKDLTVSTTGGKCIGETAKVHVNS 505
Query: 557 E---DHPTKLFLELPRQGRPYLSLQAQSVPNVSANSASPSQSHIRYTAPQNLSHSFPTTN 613
H T +FLELPRQG P+LSLQ++S N+ ++ S S ++ Y NL FP +
Sbjct: 506 SVSCHHTTNIFLELPRQGHPFLSLQSRSFSNIQVDAPSTSHDYVGYKM-HNLKRRFPEAD 564
Query: 614 ALSGDRLRYDDR---FSYLSGSQHHGNVLLG-SP------------SLTSDANLP----- 652
SG+ + +DR FSYL Q N L G SP SL++ LP
Sbjct: 565 VFSGNGIECEDRLRDFSYLHCGQ---NALAGFSPQGGKYNTRSDQNSLSATTFLPTFIPH 621
Query: 653 -RSYGVVSAGSSVHPHNSPSFAFTHP-------------RRMIVEEASGSR---RDAACP 695
+ V A S+ + P+ HP R + E S RD
Sbjct: 622 AKQSAVYRANSTWKHNPYPANLLVHPPDGTNFRKDQNQIIRGVAEIPSSVNTMSRDTVWK 681
Query: 696 SRNAENVAARAAIPEMQAQRTGLMKLTPGAKHILMPSDTTGDGTSMPVYSCVSFGS-RRG 754
+R + + + R+G +KL PGAKH+L P T DG P+YSCV F RRG
Sbjct: 682 TRKIDVDNSNISSGVRYISRSGPVKLRPGAKHVLEPRQDTDDGNYPPMYSCVPFFVIRRG 741
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,596,973
Number of extensions: 977101
Number of successful extensions: 2049
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2033
Number of HSP's successfully gapped: 3
Length of query: 769
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 660
Effective length of database: 11,344,475
Effective search space: 7487353500
Effective search space used: 7487353500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)