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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0201800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.0292) R2 : 0.297
β1 : 1.43 (0.107) R2dD : 0.287 R2D : 0.295
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0665 (0.0624) R2dN8 : 0.00235 R2N8 : 0.0105
σ : 0.548
deviance : 137.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.28 0.504 4.16 1.8 0.517 0.989 0.911 -0.633 0.179 15.2 28.4 280 -- --
115.81 0.501 4.17 1.74 0.528 1.05 0.982 -- 0.172 15.1 28.2 275 -- --
117.25 0.504 4.14 1.93 0.538 0.958 -- -1.27 0.201 14.6 29.02 224 -- --
119.2 0.509 4.17 1.7 0.508 0.97 -- -- 0.153 14.8 27.7 263 -- --
125.01 0.521 4.14 1.95 -- 0.884 -- -1.18 0.181 -- 29.7 906 -- --
130.18 0.535 4.22 1.42 0.277 -- 0.912 -- -0.0648 14.8 -- -- -- --
132.4 0.539 4.21 1.44 0.291 -- -- -- -0.0605 13.3 -- -- -- --
125.16 0.521 4.18 1.69 -- 0.888 -- -- 0.112 -- 29.2 934 -- --
186.1 0.639 4.24 -- 0.343 0.283 -- -- -0.166 13.3 26.72 377 -- --
137.62 0.548 4.22 1.43 -- -- -- -- -0.0665 -- -- -- -- --
187.4 0.64 4.25 -- 0.266 -- -- -- -0.221 13.1 -- -- -- --
191.21 0.644 4.25 -- -- 0.18 -- -- -0.194 -- 29.61 892 -- --
191.8 0.646 4.25 -- -- -- -- -- -0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.07 temperature 15 90 > th dose dependent rect. 9 23
2 113.30 temperature 15 10 > th dose dependent rect. 9 23
5 113.66 temperature 20 10 > th dose dependent rect. 10 19
6 113.76 temperature 15 30 > th dose dependent rect. 3 23
15 114.37 temperature 15 270 > th dose dependent rect. 7 22
17 114.41 temperature 20 10 > th dose dependent rect. 10 16
22 114.65 temperature 10 270 > th dose dependent rect. 9 13
33 114.86 temperature 25 10 > th dose independent rect. 10 19
38 114.93 temperature 30 30 < th dose dependent rect. 21 23
40 114.96 temperature 30 270 < th dose dependent rect. 20 23
79 115.32 temperature 30 270 < th dose dependent rect. 17 23
82 115.34 temperature 15 270 > th dose dependent rect. 16 23
89 115.39 temperature 25 270 < th dose dependent sin 23 NA
98 115.42 temperature 30 10 < th dose dependent rect. 5 23
103 115.51 temperature 30 270 < th dose dependent rect. 2 23
104 115.51 temperature 30 270 < th dose dependent rect. 13 23
106 115.52 temperature 10 10 > th dose dependent sin 20 NA
112 115.56 temperature 30 10 < th dose dependent sin 22 NA
115 115.57 temperature 30 270 < th dose dependent no NA NA
116 115.57 temperature 15 720 > th dose dependent rect. 9 4
124 115.60 temperature 25 270 < th dose dependent rect. 3 19
203 116.06 temperature 15 10 > th dose dependent no NA NA
228 116.21 temperature 10 720 > th dose dependent rect. 1 20
232 116.22 temperature 15 90 > th dose dependent rect. 19 23
250 116.32 atmosphere 1005 90 > th dose dependent rect. 23 20
264 116.37 temperature 30 90 < th dose dependent rect. 7 12
276 116.41 temperature 30 30 < th dose dependent rect. 11 23
284 116.44 temperature 30 10 < th dose dependent rect. 17 23
316 116.58 temperature 30 30 < th dose dependent rect. 23 23
352 116.75 temperature 30 10 < th dose dependent rect. 6 13
379 116.86 temperature 30 270 < th dose dependent rect. 10 23
382 116.87 atmosphere 1005 10 > th dose dependent rect. 5 14
387 116.87 temperature 15 10 > th dose dependent rect. 7 23
407 116.91 temperature 30 270 < th dose dependent rect. 8 23
428 116.96 atmosphere 1005 10 > th dose dependent rect. 24 19
433 116.98 atmosphere 1005 720 > th dose dependent rect. 21 12
466 117.06 atmosphere 1005 10 > th dose dependent rect. 2 17
497 117.13 atmosphere 1005 720 > th dose dependent rect. 21 19
503 117.14 wind 9 30 < th dose independent rect. 3 23
508 117.16 temperature 25 90 < th dose dependent rect. 7 8
575 117.30 temperature 10 720 > th dose dependent sin 2 NA
624 117.38 temperature 30 720 < th dose dependent rect. 5 10
658 117.42 temperature 20 10 > th dose dependent rect. 20 22
665 117.44 humidity 90 720 < th dose independent rect. 9 4
683 117.46 atmosphere 1005 720 > th dose dependent sin 9 NA
826 117.63 atmosphere 1005 10 > th dose dependent sin 5 NA
869 117.68 temperature 15 720 > th dose dependent rect. 1 15
921 117.75 temperature 25 720 < th dose dependent rect. 7 6
945 117.77 atmosphere 1005 720 > th dose dependent rect. 5 3