Os01g0201900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0201900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.65 | 0.514 | 6.7 | 1.61 | 0.156 | -1.6 | -1.1 | 3.47 | 0.791 | 8.06 | 25.69 | 17 | -- | -- |
| 123.1 | 0.521 | 6.75 | 1.24 | 0.2 | -1.28 | -1.18 | -- | 0.696 | 6.81 | 25.69 | 17 | -- | -- |
| 122.96 | 0.516 | 6.71 | 1.55 | 0.191 | -1.49 | -- | 3.27 | 0.782 | 6.21 | 25.69 | 18 | -- | -- |
| 126.43 | 0.527 | 6.75 | 1.21 | 0.221 | -1.18 | -- | -- | 0.697 | 5.75 | 25.59 | 18 | -- | -- |
| 124.58 | 0.52 | 6.71 | 1.56 | -- | -1.56 | -- | 3.13 | 0.792 | -- | 25.58 | 18 | -- | -- |
| 147.38 | 0.569 | 6.76 | 1.03 | 0.612 | -- | -0.0607 | -- | 0.633 | 3.83 | -- | -- | -- | -- |
| 147.39 | 0.569 | 6.76 | 1.03 | 0.611 | -- | -- | -- | 0.633 | 3.8 | -- | -- | -- | -- |
| 128.19 | 0.527 | 6.75 | 1.24 | -- | -1.31 | -- | -- | 0.728 | -- | 25.3 | 18 | -- | -- |
| 163.12 | 0.598 | 6.78 | -- | 0.325 | -0.911 | -- | -- | 0.553 | 4.73 | 25.55 | 9 | -- | -- |
| 167.95 | 0.606 | 6.76 | 1.06 | -- | -- | -- | -- | 0.649 | -- | -- | -- | -- | -- |
| 175.58 | 0.62 | 6.79 | -- | 0.631 | -- | -- | -- | 0.518 | 3.78 | -- | -- | -- | -- |
| 167.31 | 0.604 | 6.78 | -- | -- | -1.16 | -- | -- | 0.568 | -- | 25.55 | 9 | -- | -- |
| 197.57 | 0.656 | 6.79 | -- | -- | -- | -- | -- | 0.532 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.92 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 2 | 118.04 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 8 | 119.03 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 9 | 119.11 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 21 | 119.28 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 30 | 119.37 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 84 | 119.86 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 86 | 119.88 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 136 | 120.51 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 186 | 120.83 | temperature | 25.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 225 | 121.15 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 228 | 121.22 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 235 | 121.34 | temperature | 25.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 279 | 122.38 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 401 | 123.69 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 12 |
| 415 | 123.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 416 | 123.80 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 417 | 123.81 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 463 | 124.05 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 530 | 124.41 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 600 | 124.71 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 622 | 124.86 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 631 | 124.94 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 22 | NA |
| 654 | 125.11 | temperature | 25.0 | 270 | > th | dose independent | sin | 1 | NA |
| 673 | 125.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 685 | 125.30 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 688 | 125.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 5 |
| 702 | 125.38 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 703 | 125.38 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 713 | 125.42 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 723 | 125.46 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 725 | 125.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 14 |
| 726 | 125.47 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 731 | 125.49 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 733 | 125.49 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 6 |
| 738 | 125.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 739 | 125.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 749 | 125.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 816 | 125.73 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 861 | 125.82 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 6 |
| 866 | 125.84 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 871 | 125.85 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 881 | 125.87 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 15 |
| 882 | 125.87 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 894 | 125.90 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 906 | 125.94 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 907 | 125.94 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 923 | 125.99 | temperature | 30.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 930 | 126.00 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 931 | 126.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 962 | 126.11 | temperature | 25.0 | 270 | < th | dose independent | sin | 1 | NA |