BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0198900 Os01g0198900|AK069974
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0198900 Conserved hypothetical protein 307 3e-84
Os05g0201700 160 7e-40
Os01g0724700 Conserved hypothetical protein 101 4e-22
Os12g0529500 98 6e-21
Os01g0199300 82 3e-16
>Os01g0198900 Conserved hypothetical protein
Length = 216
Score = 307 bits (787), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/201 (77%), Positives = 156/201 (77%)
Query: 16 GKRVMTRALEWEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVAKCRXXXXXXXXXXXX 75
GKRVMTRALEWEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVAKCR
Sbjct: 16 GKRVMTRALEWEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVAKCRPASPSAAASTAA 75
Query: 76 XXXXXVVRYCEGTPRGDGAPPDWAHETLLEHDAARRFFRYEMNDNNMGFGVFVATFRVVP 135
VVRYCEGTPRGDGAPPDWAHETLLEHDAARRFFRYEMNDNNMGFGVFVATFRVVP
Sbjct: 76 APPGSVVRYCEGTPRGDGAPPDWAHETLLEHDAARRFFRYEMNDNNMGFGVFVATFRVVP 135
Query: 136 XXXXXXXXXPGCELRWEFEGDPVRGTPKEALVARLQAGLDGMAARVQEHLMSXXXXXXXX 195
PGCELRWEFEGDPVRGTPKEALVARLQAGLDGMAARVQEHLMS
Sbjct: 136 DAGGGDADAPGCELRWEFEGDPVRGTPKEALVARLQAGLDGMAARVQEHLMSARAADAAV 195
Query: 196 XXXXXXXXXXXLNRDKYSIAV 216
LNRDKYSIAV
Sbjct: 196 IAAGGVEAADELNRDKYSIAV 216
>Os05g0201700
Length = 202
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 24 LEWEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVAKCRXXXXXXXXXXXXXXXXXVVR 83
LEW G V + P ATADEAWALLSDFLAFHRWHP VAKCR VR
Sbjct: 16 LEWTGRVTAAAPAATADEAWALLSDFLAFHRWHPGVAKCR-------RVSGSPRSPGCVR 68
Query: 84 YCEGTP---RGDGAPPDWAHETLLEHDAARRFFRYEMNDNNMGFGVFVATFRVVPXXXXX 140
YCEG P G DWAHETLLEHDAA R RYEMNDNNMGFG F AT V
Sbjct: 69 YCEGVPGRAGGVAGAADWAHETLLEHDAAGRALRYEMNDNNMGFGTFFATLSVAAAGAAA 128
Query: 141 XXXXPGCELRWEFEGDPVRGTPKEALVARLQAGLDGMAARVQEHL 185
CELRWEFE +PV GT KEAL ARLQ G+DGMA RVQE L
Sbjct: 129 AAGG--CELRWEFECEPVAGTAKEALAARLQDGIDGMARRVQEAL 171
>Os01g0724700 Conserved hypothetical protein
Length = 222
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 26 WEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVAKCRXXXXXXXXXXXXXXXXXVVRYC 85
W G V + V T D+AWALL DF + HRW P V CR VRYC
Sbjct: 72 WHGSVRAAVEGPTPDQAWALLGDFCSLHRWVPSVQTCR-------RVEGAEGQPGCVRYC 124
Query: 86 EG-TPRGDGAPPDWAHETLLEHDAARRFFRYEMNDNNMGFGVFVATFRVVPXXXXXXXXX 144
G + A W+ E L+E D R + YE+ + N GFG + AT RV P
Sbjct: 125 AGPVNKAAEAVAGWSKERLVEFDPVARRYSYEVVETNKGFGRYAATLRVEPDPA------ 178
Query: 145 PGCELRWEFEGDPVRGTPKEALVARLQAGLDGMAARVQEHLMS 187
GC + W FE DPVRG E V L G+A R++E +MS
Sbjct: 179 -GCAVAWSFEADPVRGWSLEGFVGFLDELARGVARRLEEEIMS 220
>Os12g0529500
Length = 273
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 81 VVRYCEGTPRGDGAPPDWAHETLLEHDAARRFFRYEMNDNNMGFGVFVATFRV-VPXXXX 139
+VR GTP GDG PPDWAHE LLEHDAARRFFRYEMN N+MGFGVF A FRV V
Sbjct: 203 LVRSDHGTPCGDGTPPDWAHEMLLEHDAARRFFRYEMNGNSMGFGVFFAMFRVIVVVPDA 262
Query: 140 XXXXXPGCELR 150
PGCELR
Sbjct: 263 AAGDAPGCELR 273
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/48 (89%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Query: 16 GKRVMTRALEWEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVAKCR 63
GK+V TR LEWEGCVV PVPTATADEAW LLSDFLAFHRWHPRVAKCR
Sbjct: 35 GKKV-TRVLEWEGCVVLPVPTATADEAWVLLSDFLAFHRWHPRVAKCR 81
>Os01g0199300
Length = 192
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 25 EWEGCVVSPVPTATADEAWALLSDFLAFHRWHPRVAKCRXXXXXXXXXXXXXXXXXVVRY 84
+W G V + +P A AW ++ F A HR+ P + C VR+
Sbjct: 24 QWRGAVEAALPGTPASAAWPHVASFYAAHRYLPGIDVCE-RVGDGGEDGGLLLVPGCVRH 82
Query: 85 CEGTPRGDGAPPDWAHETLLEH-DAARRFFRYEMNDNNMGFGVFVATFRVVPXXXXXXXX 143
+ G WA E LLE D A R RY + D+NMGFG +VAT RV+
Sbjct: 83 VASSAAG-----LWAREELLEAPDHAARRLRYAVVDSNMGFGRYVATLRVLDGGS----- 132
Query: 144 XPGCELRWEFEGDPV--RGTPKEALVARLQAGLDGMAARVQE 183
GC + W FE D V G + ALVARL A +DGMA RVQ+
Sbjct: 133 --GCRIAWAFECDAVCGEGWSEAALVARLAASVDGMAERVQQ 172
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,962,172
Number of extensions: 200726
Number of successful extensions: 460
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 6
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)